Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_G10
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.006
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.056
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.39
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.52
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.3 bits (80), Expect = 0.006
Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Frame = +3
Query: 636 PXPXGXGXWGXGPXSLPPXKXPPARXXGGGXXPPXPQRGXXPXPPXXG---GPPXXXXXP 806
P P P SLPP PP+ G PP P P G PP P
Sbjct: 416 PVPTPPSLPPSAPPSLPP-SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 807 GPPRAXPPXP 836
PP A P P
Sbjct: 475 APPPAPAPAP 484
Score = 33.5 bits (73), Expect = 0.042
Identities = 24/71 (33%), Positives = 25/71 (35%)
Frame = +3
Query: 663 GXGPXSLPPXKXPPARXXGGGXXPPXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXPXG 842
G SLPP PP R G P PQ P PP PP P R PP
Sbjct: 330 GSSNSSLPPP-PPPPRSNAAGSIPLPPQGRSAPPPP----PP--RSAPSTGRQPPPLSSS 382
Query: 843 XGLFXKRPPPP 875
+ PPP
Sbjct: 383 RAVSNPPAPPP 393
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Frame = +3
Query: 684 PPXKXPPARXXGGGXXPPX---PQRGXXPXPPXXGGPPXXXXXPGPPR---AXPPXPXGX 845
PP PP+R G PP P PP P PP+ A PP P
Sbjct: 311 PPPPPPPSRRNRG--KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 846 GLFXKRPPPPXXNKK 890
R PPP + +
Sbjct: 369 APSTGRQPPPLSSSR 383
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +3
Query: 672 PXSLPPXKXPPARXXGGGXXPPXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXPXGXGL 851
P SLPP PP+ PP G PP P P A PP P
Sbjct: 420 PPSLPP-SAPPSLPPSA---PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 852 FXKRPPP 872
P P
Sbjct: 476 PPPAPAP 482
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.056
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +3
Query: 663 GXGPXSLPPXKXPPARXXGGGXXPPXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXP 836
G P P PP G P P P P G PP P P A PP P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP----VPKPSVAAPPVP 1172
Score = 32.7 bits (71), Expect = 0.074
Identities = 22/68 (32%), Positives = 22/68 (32%)
Frame = +3
Query: 672 PXSLPPXKXPPARXXGGGXXPPXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXPXGXGL 851
P P PP G P P P P G PP P P A PP P G
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP----VPKPSVAAPPVPAPSG- 1157
Query: 852 FXKRPPPP 875
PP P
Sbjct: 1158 ---APPVP 1162
Score = 32.7 bits (71), Expect = 0.074
Identities = 22/71 (30%), Positives = 22/71 (30%)
Frame = +3
Query: 663 GXGPXSLPPXKXPPARXXGGGXXPPXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXPXG 842
G P P PP P P G P PP PP P P PP P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP----VPTPSAGLPPVPVP 1232
Query: 843 XGLFXKRPPPP 875
K PP P
Sbjct: 1233 TA---KAPPVP 1240
Score = 31.5 bits (68), Expect = 0.17
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Frame = +3
Query: 663 GXGPXSLPPXKXPPARXXGGGXXPPXPQRGXXPXP-PXXGGPPXXXXXPGPPRAXPP 830
G P P PP G P P P P P G PP G P PP
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 28.7 bits (61), Expect = 1.2
Identities = 24/75 (32%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = +3
Query: 672 PXSLPPXKXPPARXXGGGXXPPXPQRGXXPXP-PXXGGPPXXXXXPGPPRAXPPXP-XGX 845
P P PP G P P P P P G PP PP PP P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP-----PPSTAPPVPTPSA 1224
Query: 846 GLFXKRPPPPXXNKK 890
GL PP P K
Sbjct: 1225 GL----PPVPVPTAK 1235
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +3
Query: 663 GXGPXSLPPXKXPPARXXGGGXXPPXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXPXG 842
G P P P + P P P P G PP P P A PP P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP----VPKPSVAAPPVPVP 1136
Query: 843 XGLFXKRPPPP 875
G PP P
Sbjct: 1137 SG----APPVP 1143
Score = 27.5 bits (58), Expect = 2.8
Identities = 21/64 (32%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Frame = +3
Query: 687 PXKXPPARXXGGGXXP-PXPQRGXXPXP-PXXGGPPXXXXXPGPPRAXPPXPXGXGLFXK 860
P PP P P P G P P P G PP PP PP P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP-----PPSEAPPVPKPSVGVPP 1209
Query: 861 RPPP 872
PPP
Sbjct: 1210 VPPP 1213
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Frame = +3
Query: 693 KXPPARXXGGGXXP-PXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXPXGXGLFXKRPP 869
K PP P P P P P PP G P A PP P P
Sbjct: 1020 KAPPVPLPSADAPPIPVPSTAP-PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078
Query: 870 P 872
P
Sbjct: 1079 P 1079
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.39
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 732 PPXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXPXGXGLFXKRPPPP 875
P PQ P PP P PP A PP P G PPPP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSA-PPMPAGP---PSAPPPP 1734
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Frame = +3
Query: 672 PXSLPPXKXPPARXXG-GGXXPPXPQRGXXPXP---PXXGGPPXXXXXPGPPRAXPPXP 836
P S PP + A PP P P P P GPP P P + P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.52
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Frame = +3
Query: 732 PPXPQRGXXPXP---PXXGGPPXXXXXPGPPRAXPPXPXGXGLFXKRPPPP 875
PP P P P P PP PP PP G G PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.52
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +3
Query: 672 PXSLPPXKXPPARXXGGGXXPPXPQ--RGXXPXPPXXGGPPXXXXXPGPPRAXPPXP 836
P P PPA GG PP P G P PP PP G R P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP---PPPPAVSAGGSRYYAPAP 797
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +3
Query: 732 PPXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXPXGXGLFXKRPPP 872
PP P G P PP P P PP PP G P P
Sbjct: 753 PPAPIMGGPPPPPPP--PGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +3
Query: 732 PPXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXPXGXGLFXKRPPPP 875
PP PQ P PP P P + PP P PPP
Sbjct: 130 PPTPQSELRPPT---SAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +3
Query: 732 PPXPQRGXXPXPPXXGGPPXXXXXPGPPRAXPPXPXGXGLFXKRPPPP 875
P P RG P G P PP P + + PPPP
Sbjct: 112 PALPSRGTPSLPSRPGSRPSVLNQ----EQVPPPPVRPNVMSQMPPPP 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,742
Number of Sequences: 5004
Number of extensions: 21664
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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