Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_G08
(998 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 33 0.47
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 32 0.82
07_01_0974 + 8211602-8212051 31 1.4
02_01_0381 - 2764331-2764342,2768966-2769907 31 1.4
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 30 2.5
05_01_0141 - 937428-937717,938483-938705 29 4.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 5.8
07_03_1136 + 24218601-24218734,24218769-24219906 23 6.3
08_02_1310 - 26037025-26038074 29 7.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 24 8.0
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 32.7 bits (71), Expect = 0.47
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Frame = +2
Query: 671 PPPPXXPXXGGGGGG----XFXXPPP 736
PPPP P GGGGGG + PPP
Sbjct: 70 PPPPSYPSGGGGGGGGGTVMYTSPPP 95
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Frame = +2
Query: 698 GGGGGGXFXXPPP----LFFFXXXXXXXPPP 778
GGGGGG + PPP L +F PPP
Sbjct: 130 GGGGGGAYPTPPPPNPFLPYFPFYYYSPPPP 160
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 31.9 bits (69), Expect = 0.82
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +2
Query: 671 PPP--PXXPXXGGGGGGXFXXPPP 736
PPP P P GGGGGG F PP
Sbjct: 13 PPPQHPPPPQAGGGGGGEFYRGPP 36
>07_01_0974 + 8211602-8212051
Length = 149
Score = 31.1 bits (67), Expect = 1.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 671 PPPPXXPXXGGGGGGXFXXPP 733
PPPP P GGG GG PP
Sbjct: 49 PPPPSSPVGGGGTGGGGPSPP 69
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 31.1 bits (67), Expect = 1.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 671 PPPPXXPXXGGGGGG 715
PPPP P GGGGGG
Sbjct: 67 PPPPNQPSAGGGGGG 81
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 30.3 bits (65), Expect = 2.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 674 PPPXXPXXGGGGGGXFXXPPP 736
P P P GGGGGG PPP
Sbjct: 26 PLPPIPSCGGGGGGAGPTPPP 46
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.5 bits (63), Expect = 4.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 698 GGGGGGXFXXPPPLFFFXXXXXXXPPPP 781
GGGGG + PP ++ PPPP
Sbjct: 23 GGGGGHGYPYPPQQGYYPPPPTAYPPPP 50
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 5.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 662 GXXPPPPXXPXXGGGGGGXFXXPPPLFFFXXXXXXXPPPP 781
G PPPP G G G PPP PP P
Sbjct: 299 GHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAP 338
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 23.4 bits (48), Expect(3) = 6.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 662 GXXPPPPXXPXXGGGGG 712
G PP P GGGGG
Sbjct: 113 GGGGPPSLPPGAGGGGG 129
Score = 21.4 bits (43), Expect(3) = 6.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 698 GGGGGGXFXXPPP 736
GGGGGG PP
Sbjct: 149 GGGGGGGALARPP 161
Score = 20.6 bits (41), Expect(3) = 6.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 689 PXXGGGGGG 715
P GGGGGG
Sbjct: 133 PAPGGGGGG 141
>08_02_1310 - 26037025-26038074
Length = 349
Score = 28.7 bits (61), Expect = 7.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 671 PPPPXXPXXGGGGG 712
PPPP P GGGGG
Sbjct: 152 PPPPPPPSSGGGGG 165
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 24.2 bits (50), Expect(2) = 8.0
Identities = 11/37 (29%), Positives = 11/37 (29%)
Frame = +3
Query: 669 PPPPPXXPXXXXXXXXXFXPPPXFFFXXXXXGXXPPP 779
PP PP P PPP PPP
Sbjct: 732 PPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPP 768
Score = 22.6 bits (46), Expect(2) = 8.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 666 GPPPPPXXP 692
GPPPPP P
Sbjct: 688 GPPPPPPPP 696
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,658,523
Number of Sequences: 37544
Number of extensions: 546579
Number of successful extensions: 2750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2356
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2928685000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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