Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_G08
         (998 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295156-1|CAL26602.1|  505|Homo sapiens WASL protein protein.         27   8.3  
U94832-1|AAB53222.1|  711|Homo sapiens KSRP protein.                   31   8.6  
BC085004-1|AAH85004.1|  710|Homo sapiens KHSRP protein protein.        31   8.6  
AF093747-1|AAD29861.1|  115|Homo sapiens KH type splicing regula...    31   8.6  

>AM295156-1|CAL26602.1|  505|Homo sapiens WASL protein protein.
          Length = 505

 Score = 26.6 bits (56), Expect(2) = 8.3
 Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
 Frame = +3

Query: 669 PPPPPXXPXXXXXXXXX---FXPPPXFFFXXXXXGXXPPP 779
           PPPPP  P            + PPP         G  PPP
Sbjct: 323 PPPPPSRPSVAVPPPPPNRMYPPPPPALLSSAPSGPPPPP 362



 Score = 22.6 bits (46), Expect(2) = 8.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 666 GPPPPPXXP 692
           GPPPPP  P
Sbjct: 286 GPPPPPPPP 294


>U94832-1|AAB53222.1|  711|Homo sapiens KSRP protein.
          Length = 711

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 662 GXXPPPPXXPXXGGGG-GGXFXXPPP 736
           G  PP P  P  GGGG GG    PPP
Sbjct: 7   GGPPPGPPPPAGGGGGAGGAGGGPPP 32


>BC085004-1|AAH85004.1|  710|Homo sapiens KHSRP protein protein.
          Length = 710

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 662 GXXPPPPXXPXXGGGG-GGXFXXPPP 736
           G  PP P  P  GGGG GG    PPP
Sbjct: 7   GGPPPGPPPPAGGGGGAGGAGGGPPP 32


>AF093747-1|AAD29861.1|  115|Homo sapiens KH type splicing
           regulatory protein protein.
          Length = 115

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 662 GXXPPPPXXPXXGGGG-GGXFXXPPP 736
           G  PP P  P  GGGG GG    PPP
Sbjct: 7   GGPPPGPPPPAGGGGGAGGAGGGPPP 32


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,905,778
Number of Sequences: 237096
Number of extensions: 2382538
Number of successful extensions: 7214
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5731
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13323281566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)