BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_G07
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 1.9
01_01_0796 + 6190931-6192745 29 5.8
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 740 PPPPPXGGXXFFXXXXXPPPP 802
PPPPP G F PPPP
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPP 570
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 739 PPPPPXGGGXXFXXXXXPPP 798
PPPPP GG + PPP
Sbjct: 239 PPPPPAAGGSLWIPELPPPP 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,290,017
Number of Sequences: 37544
Number of extensions: 297363
Number of successful extensions: 1133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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