Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_G06
(970 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 165 8e-42
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 136 3e-33
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 80 5e-16
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 61 3e-10
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 37 0.005
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 35 0.015
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 32 0.11
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 31 0.24
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 28 2.3
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 3.0
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 27 4.0
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 4.0
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 5.3
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 26 6.9
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 6.9
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 26 6.9
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 6.9
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 9.2
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 165 bits (401), Expect = 8e-42
Identities = 76/87 (87%), Positives = 80/87 (91%)
Frame = +2
Query: 152 MGNMFANLFKGLFGKKEMRILMVGXDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 331
MG + LF+ LFGK+EMRILMVG DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 332 ISFTVWDVGGQXKIRPLWRHYFQNTQG 412
ISFTVWDVGGQ KIRPLWRHYFQNTQG
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQG 87
Score = 124 bits (299), Expect = 2e-29
Identities = 60/92 (65%), Positives = 65/92 (70%)
Frame = +3
Query: 414 LIFVVDSNXXXXXXXXXXXXXXXXXXXXXXXAVLLIFANKQDLPNAMNAAEITDXLGLHS 593
+IFVVDSN A+LL+FANKQDLPNAMNAAEITD LGLHS
Sbjct: 88 IIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHS 147
Query: 594 LRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 689
LR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 148 LRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 136 bits (330), Expect = 3e-33
Identities = 62/83 (74%), Positives = 67/83 (80%)
Frame = +2
Query: 164 FANLFKGLFGKKEMRILMVGXDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 343
F+ F LF KEMRILM+G DAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 344 VWDVGGQXKIRPLWRHYFQNTQG 412
VWDVGGQ KIRPLWRHYF T+G
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKG 91
Score = 79.8 bits (188), Expect = 5e-16
Identities = 41/93 (44%), Positives = 51/93 (54%)
Frame = +3
Query: 408 RDLIFVVDSNXXXXXXXXXXXXXXXXXXXXXXXAVLLIFANKQDLPNAMNAAEITDXLGL 587
+ LIFVVDS +LL+ ANKQDLP A++ A+ITD L L
Sbjct: 90 KGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQL 149
Query: 588 HSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 686
L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 150 DKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 79.8 bits (188), Expect = 5e-16
Identities = 34/73 (46%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Frame = +2
Query: 194 KKEMRILMVGXDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQXK 370
++E+R+L++G D AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 371 IRPLWRHYFQNTQ 409
+R W++YF++T+
Sbjct: 73 LRNFWKNYFESTE 85
Score = 45.6 bits (103), Expect = 1e-05
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +3
Query: 513 LLIFANKQDLPNAMNAAEITDXLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 686
+L+ ANK D+ A+++ EI+ L + ++ +W I + A +G + + + WL+N LK
Sbjct: 120 ILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 60.9 bits (141), Expect = 3e-10
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = +2
Query: 197 KEMRILMVGXDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQXKIR 376
K ++L +G D AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 377 PLWRHYFQNTQG 412
LWR YF G
Sbjct: 79 RLWRDYFPEVNG 90
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 36.7 bits (81), Expect = 0.005
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +2
Query: 206 RILMVGXDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYK----NISFTVWDVGGQXK 370
++++VG GKTT + + GE I T+G V + + I F VWD GQ K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 371 IRPLWRHYF 397
+ L Y+
Sbjct: 71 LGGLRDGYY 79
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 35.1 bits (77), Expect = 0.015
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +2
Query: 203 MRILMVGXDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQ 364
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 32.3 bits (70), Expect = 0.11
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 320 EYKNISFTVWDVGGQXKIRPLWRHYFQNTQGSNL 421
+ K I +WD GQ K R + R+Y++ G+ L
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVL 91
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 31.1 bits (67), Expect = 0.24
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 287 IPTIGFNVETVEYKNISFTVWDVGGQXKIRPLWRHYFQN 403
I T G + ET + +DVGGQ R W H F+N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFEN 257
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 191 GKKEMRILMVGXDAAGKTTILYKLKL 268
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 194 KKEMRILMVGXDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 325
KK + ++G +GKT++ +L E TT+P+I N +Y
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY 78
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 197 KEMRILMVGXDAAGKTTILYKLKLGEIVTTIPTI 298
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.1 bits (57), Expect = 4.0
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -2
Query: 318 TVSTLKPIVGIVVTISPNLSLYRIVVLPAASXPTINILISFLPKRPLNKFANIFPILNYY 139
T T++P V + ++S N +L VVL + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
Query: 138 EYNF 127
+ F
Sbjct: 248 IHVF 251
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 173 LFKGLFGKKEMRILMVGXDAAGKTTI 250
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 388 PPQWSDFVLASXIPHSKTNVFVFY 317
PP+ SDF++ S H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 TIGFNVETVEYKNISFTVWDVGGQXKIRPLWRHYFQN 403
T+G + + ++ ++DVGGQ R W + F+N
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFEN 215
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.2 bits (55), Expect = 6.9
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 450 YVPDRYCLLRRLDPCV 403
Y+ +CL+R+ DPC+
Sbjct: 288 YITQLFCLVRQFDPCI 303
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 188 FGKKEMRILMVGXDA-AGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 352
F K+ RIL VG + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 26.2 bits (55), Expect = 6.9
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 658 PSYSPSPEVAHVAWMYQLRLRSECRPXL-SVISAAFIAFGRSCLFA 524
P+ SP PEV+H W+ L P L S + IAF CL A
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 479 PHELFACLXDTFPIVTVY-YED*IPVYFGNNAST 381
P E+ +CL PI ++ Y+D P YFG+ T
Sbjct: 288 PQEILSCLSQ-IPIKFIFFYQDVRPPYFGSYTKT 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,497
Number of Sequences: 5004
Number of extensions: 61634
Number of successful extensions: 195
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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