Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_G03
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 0.73
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 32 0.73
07_01_0862 - 7172083-7172931 30 2.9
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 3.9
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 29 5.2
06_03_0757 + 24267599-24268882 29 5.2
07_03_1136 + 24218601-24218734,24218769-24219906 28 9.0
07_03_0560 + 19479597-19480667 28 9.0
06_03_1326 - 29355467-29355817 28 9.0
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.9 bits (69), Expect = 0.73
Identities = 14/48 (29%), Positives = 17/48 (35%)
Frame = +1
Query: 670 PPPPXXKXXIXXXPKXXXPPLXVTXKRTPXXPPXXXXXPXAGVXXPHP 813
PPPP + P PP + + P PP P V P P
Sbjct: 590 PPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPP 637
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +1
Query: 673 PPPXXKXXIXXXPKXXXPPLXVTXKRTPXXPPXXXXXP-XAGVXXPHPFFFXLXXXXPPP 849
PPP P PP +T K+ P PP P G P P PP
Sbjct: 735 PPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQAPKPPGTVPPPPPLHGASGRPHPP 794
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.9 bits (69), Expect = 0.73
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 830 PXGXPPPENXXVRXXXGXPXXXTPPPPP 913
P G PPP G P PPPPP
Sbjct: 59 PPGPPPPHQPQFNFGPGPPQQQQPPPPP 86
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/72 (26%), Positives = 25/72 (34%)
Frame = +1
Query: 640 GXXXKKKNXXPPPPXXKXXIXXXPKXXXPPLXVTXKRTPXXPPXXXXXPXAGVXXPHPFF 819
G ++ PPPP + P PP V + P PP P + P P
Sbjct: 73 GPGPPQQQQPPPPPQ----MYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPP-- 126
Query: 820 FXLXXXXPPPRK 855
PPPR+
Sbjct: 127 ---PPTQPPPRE 135
>07_01_0862 - 7172083-7172931
Length = 282
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 652 KKKNXXPPPPXXKXXIXXXPKXXXPPLXVTXKRTPXXPP 768
KKK PP P + + PPL + K+ P PP
Sbjct: 179 KKKPLPPPSPPPQPPLPEKENTPLPPLLLPPKKKPLPPP 217
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 830 PXGXPPPENXXVRXXXGXPXXXTPPPPP 913
P PPP+ + G P PPPPP
Sbjct: 231 PPPPPPPKPANIAGAPGLPLPPPPPPPP 258
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 842 PPPENXXVRXXXGXPXXXTPPPPP 913
PPPE+ P TPPPPP
Sbjct: 618 PPPEHAEPAVTVAAPISQTPPPPP 641
>06_03_0757 + 24267599-24268882
Length = 427
Score = 29.1 bits (62), Expect = 5.2
Identities = 24/84 (28%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Frame = -1
Query: 915 GGGGGGVXXXGXPXXXRTXXFSGGGXPXG*XKKKGVGXXNPRGGXXXRXXRXXGGSFXXX 736
GGGGG G GGG P G + G R G R GG+
Sbjct: 250 GGGGGSGSGGGARQTFPGGGTGGGGFPAGQARTGGNTNRRNRKGNGGRGGGNGGGNGGGS 309
Query: 735 XKGGXT--XLRXGXNXXFXXXGGG 670
GG T G GGG
Sbjct: 310 GGGGGTRQAFSGGGGSGVSSGGGG 333
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 9.0
Identities = 24/82 (29%), Positives = 26/82 (31%)
Frame = -1
Query: 915 GGGGGGVXXXGXPXXXRTXXFSGGGXPXG*XKKKGVGXXNPRGGXXXRXXRXXGGSFXXX 736
GGGGGG G GGG G K VG GG R GG
Sbjct: 201 GGGGGGGLGGGGGEGGAPERVIGGGGGGGGALKCVVGGGGGGGGALKRAAGSGGGGGALE 260
Query: 735 XKGGXTXLRXGXNXXFXXXGGG 670
+ G G + GGG
Sbjct: 261 CEIGGGGGGGGTDRNKGGGGGG 282
>07_03_0560 + 19479597-19480667
Length = 356
Score = 28.3 bits (60), Expect = 9.0
Identities = 25/82 (30%), Positives = 27/82 (32%)
Frame = -1
Query: 915 GGGGGGVXXXGXPXXXRTXXFSGGGXPXG*XKKKGVGXXNPRGGXXXRXXRXXGGSFXXX 736
GG GGGV G GGG G GVG +GG GGS
Sbjct: 107 GGFGGGVGGGGGGEGGGLGGGGGGGLGGG--GGGGVGGGGGQGGGFGAGGGVGGGSGTGG 164
Query: 735 XKGGXTXLRXGXNXXFXXXGGG 670
GG G + GGG
Sbjct: 165 GLGGGGGGGFGGDGGGGLGGGG 186
>06_03_1326 - 29355467-29355817
Length = 116
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = -1
Query: 915 GGGGGGVXXXGXPXXXRTXXFSGGGXPXG*XKKKGVGXXNPRGGXXXRXXRXXGG 751
GGGGGG G SGGG G K G G GG GG
Sbjct: 14 GGGGGGGGGKGGGGGSGGGGRSGGGGGGGGGKGGGEGGSGKYGGGYSGGHAGGGG 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,898,015
Number of Sequences: 37544
Number of extensions: 521630
Number of successful extensions: 1333
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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