Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_G03
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    33   0.22 
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    30   2.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.5  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    29   6.1  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    28   8.1  

>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 204 F*HSSCCRSNKVLCCGYR 151
           F +SSCC SN   CCGYR
Sbjct: 86  FGYSSCCNSNNFSCCGYR 103


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/66 (33%), Positives = 23/66 (34%)
 Frame = -1

Query: 537 PXXPPGXXKXXXGXXGISPKRGXXFXGGXGEXGXPPPTK*XXPGXPXVLGXLKLGXPPR* 358
           P  P G      G  G     G    GG G  G PPP      G P   G   +G PP  
Sbjct: 403 PGGPGGYGPPPPGGPGAPGSYGPP-QGGPGGFGPPPPGGPGAYGPPPT-GFPPVGAPPPG 460

Query: 357 FXGCPG 340
             G PG
Sbjct: 461 AAGAPG 466


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 27/95 (28%), Positives = 31/95 (32%), Gaps = 5/95 (5%)
 Frame = +2

Query: 320 PKTLEIXPGQPKNYRGGXPSFKXPRTXGXP---GXXYXVGGGXPXSPXPPXKXXPLFGEI 490
           P   ++    P    GG  +   P T G P   G     GG  P  P PP    P+ G  
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALP-PITGGPPPPPGLPPITGG--PPPPPPPGGLPPITGGP 742

Query: 491 PXXPXXXXXXP--GGXXG*KXXXXXXXXPPPXGPP 589
           P  P      P  GG             PPP  PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 27/95 (28%), Positives = 31/95 (32%), Gaps = 5/95 (5%)
 Frame = +2

Query: 320 PKTLEIXPGQPKNYRGGXPSFKXPRTXGXP---GXXYXVGGGXPXSPXPPXKXXPLFGEI 490
           P   ++    P    GG  +   P T G P   G     GG  P  P PP    P+ G  
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALP-PITGGPPPPPGLPPITGG--PPPPPPPGGLPPITGGP 742

Query: 491 PXXPXXXXXXP--GGXXG*KXXXXXXXXPPPXGPP 589
           P  P      P  GG             PPP  PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 27/95 (28%), Positives = 31/95 (32%), Gaps = 5/95 (5%)
 Frame = +2

Query: 320 PKTLEIXPGQPKNYRGGXPSFKXPRTXGXP---GXXYXVGGGXPXSPXPPXKXXPLFGEI 490
           P   ++    P    GG  +   P T G P   G     GG  P  P PP    P+ G  
Sbjct: 269 PPPTKMNLSAPSTSAGGSSALP-PITGGPPPPPGLPPITGG--PPPPPPPGGLPPITGGP 325

Query: 491 PXXPXXXXXXP--GGXXG*KXXXXXXXXPPPXGPP 589
           P  P      P  GG             PPP  PP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 24/84 (28%), Positives = 25/84 (29%), Gaps = 1/84 (1%)
 Frame = +2

Query: 341 PGQPKNYRGGXP-SFKXPRTXGXPGXXYXVGGGXPXSPXPPXKXXPLFGEIPXXPXXXXX 517
           P  P    G  P S   P     PG    +  G P  P PP       G  P  P     
Sbjct: 503 PPPPPPLLGIAPMSTNAPPPPPMPGMA-PLSTGAPTPPPPPPVGMANGGPPPPPPLPLDL 561

Query: 518 XPGGXXG*KXXXXXXXXPPPXGPP 589
             G   G K        PPP  PP
Sbjct: 562 LKGAVAGLKSVPGGPPPPPPPPPP 585


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 24/81 (29%), Positives = 24/81 (29%)
 Frame = -1

Query: 915 GGGGGGVXXXGXPXXXRTXXFSGGGXPXG*XKKKGVGXXNPRGGXXXRXXRXXGGSFXXX 736
           GGGGGG    G         F GGG   G     G G  N  G          GG     
Sbjct: 53  GGGGGGGGGGGGGFGGGNGGFGGGGGGSG-----GGGGGNNIGSLVGSLIGGGGGGGNYG 107

Query: 735 XKGGXTXLRXGXNXXFXXXGG 673
             GG      G    F   GG
Sbjct: 108 GGGGNQGGGGGGGFNFNDIGG 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,986,622
Number of Sequences: 27780
Number of extensions: 374703
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)