Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_G02
(932 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 180 7e-45
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 180 7e-45
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 180 7e-45
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 180 7e-45
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 55 3e-07
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 55 3e-07
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 55 3e-07
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 55 3e-07
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 55 3e-07
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 55 3e-07
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 55 3e-07
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 55 3e-07
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 47 9e-05
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 47 9e-05
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 47 9e-05
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 47 9e-05
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 47 9e-05
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 45 5e-04
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 180 bits (438), Expect = 7e-45
Identities = 88/103 (85%), Positives = 92/103 (89%), Gaps = 3/103 (2%)
Frame = +3
Query: 186 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 365
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TVTYRDGRVAQLE
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 366 VYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 485
VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 180 bits (438), Expect = 7e-45
Identities = 88/103 (85%), Positives = 92/103 (89%), Gaps = 3/103 (2%)
Frame = +3
Query: 186 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 365
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TVTYRDGRVAQLE
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 366 VYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 485
VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 180 bits (438), Expect = 7e-45
Identities = 88/103 (85%), Positives = 92/103 (89%), Gaps = 3/103 (2%)
Frame = +3
Query: 186 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 365
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TVTYRDGRVAQLE
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 366 VYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 485
VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 180 bits (438), Expect = 7e-45
Identities = 88/103 (85%), Positives = 92/103 (89%), Gaps = 3/103 (2%)
Frame = +3
Query: 186 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN 365
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TVTYRDGRVAQLE
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 366 VYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 485
VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 61 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 55.2 bits (127), Expect = 3e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 198 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 374
+P+ +L A+ H + E GE Y G L+ ++ MN + V T RDG + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 375 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 470
RGS I++L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPDEI--IDMVKEEVVAKGRGRG 91
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 55.2 bits (127), Expect = 3e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 198 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 374
+P+ +L A+ H + E GE Y G L+ ++ MN + V T RDG + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 375 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 470
RGS I++L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPDEI--IDMVKEEVVAKGRGRG 91
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 55.2 bits (127), Expect = 3e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 198 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 374
+P+ +L A+ H + E GE Y G L+ ++ MN + V T RDG + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 375 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 470
RGS I++L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPDEI--IDMVKEEVVAKGRGRG 91
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 55.2 bits (127), Expect = 3e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 198 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 374
+P+ +L A+ H + E GE Y G L+ ++ MN + V T RDG + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 375 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 470
RGS I++L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPDEI--IDMVKEEVVAKGRGRG 91
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 55.2 bits (127), Expect = 3e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 198 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 374
+P+ +L A+ H + E GE Y G L+ ++ MN + V T RDG + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 375 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 470
RGS I++L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPDEI--IDMVKEEVVAKGRGRG 91
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 55.2 bits (127), Expect = 3e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 198 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 374
+P+ +L A+ H + E GE Y G L+ ++ MN + V T RDG + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 375 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 470
RGS I++L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPDEI--IDMVKEEVVAKGRGRG 91
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 55.2 bits (127), Expect = 3e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 198 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 374
+P+ +L A+ H + E GE Y G L+ ++ MN + V T RDG + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 375 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 470
RGS I++L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPDEI--IDMVKEEVVAKGRGRG 91
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 55.2 bits (127), Expect = 3e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 198 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDG-RVAQLENVYI 374
+P+ +L A+ H + E GE Y G L+ ++ MN + V T RDG + ++ YI
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 375 RGSKIRFLILPDMLKNAPMFKRQGNKPTAGRG 470
RGS I++L +PD + M K + GRG
Sbjct: 62 RGSTIKYLRIPDEI--IDMVKEEVVAKGRGRG 91
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 47.2 bits (107), Expect = 9e-05
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Frame = +3
Query: 204 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 383
++ L + VT E G G + + +MN + V +T ++ QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 384 KIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 473
IR+ ILPD ++ P K + + AGRG+
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 47.2 bits (107), Expect = 9e-05
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Frame = +3
Query: 204 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 383
++ L + VT E G G + + +MN + V +T ++ QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 384 KIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 473
IR+ ILPD ++ P K + + AGRG+
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 47.2 bits (107), Expect = 9e-05
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Frame = +3
Query: 204 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 383
++ L + VT E G G + + +MN + V +T ++ QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 384 KIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 473
IR+ ILPD ++ P K + + AGRG+
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 47.2 bits (107), Expect = 9e-05
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Frame = +3
Query: 204 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 383
++ L + VT E G G + + +MN + V +T ++ QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 384 KIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 473
IR+ ILPD ++ P K + + AGRG+
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 47.2 bits (107), Expect = 9e-05
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Frame = +3
Query: 204 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 383
++ L + VT E G G + + +MN + V +T ++ QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 384 KIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 473
IR+ ILPD ++ P K + + AGRG+
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 44.8 bits (101), Expect = 5e-04
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Frame = +3
Query: 204 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 383
++ L + V E G G + + +MN + V +T ++ QLE + IRG+
Sbjct: 4 VRFLMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 384 KIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 473
IR+ ILPD ++ P K + + AGRG+
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,173,335
Number of Sequences: 237096
Number of extensions: 1829617
Number of successful extensions: 7400
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7392
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12214492840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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