Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_F24
(903 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 113 3e-26
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 97 4e-21
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 39 8e-04
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 38 0.002
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 37 0.005
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 36 0.010
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 33 0.073
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 29 0.68
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 2.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 2.8
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 4.8
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 27 4.8
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 8.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 8.4
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 113 bits (272), Expect = 3e-26
Identities = 61/123 (49%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Frame = -1
Query: 495 GGDFNKEQELILVDHCGG-PVFVTKWPKDMKSFYMKECNNDSSKVDALDLLSPVTGEVVG 319
G D + E E L + PVFVT +P+ +K FYMK D+ V A+DLL P GE+ G
Sbjct: 316 GNDLSSEHEKYLCEILHKTPVFVTDYPQKIKPFYMKSSGPDT--VAAVDLLVPQVGELAG 373
Query: 318 GSLREDNYEKLKLKLPSERLHWYLELRKYGNIPTGGFGLGLERLLQVLCGVN-NIKDTLP 142
GSLR+D+ ++ K P L WYL+L KY N P GGFGLG+ERL+ L G N N+K+T+P
Sbjct: 374 GSLRKDHLDEYKTYPPE--LQWYLDLMKYSNAPHGGFGLGIERLIAFLEGENTNVKETIP 431
Query: 141 FPR 133
FPR
Sbjct: 432 FPR 434
Score = 32.3 bits (70), Expect = 0.097
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -3
Query: 865 FFWIETFLTVFGQLHLEPIXRGMXNGXTLGPTFWSRKLQGLDCXFXSFTC*KQN*HXVRT 686
FF FLTV QLHLE + G+ T+ P F + + F + + +
Sbjct: 196 FFDRPAFLTVSTQLHLEALALGLSRVYTISPAFRAEQ-SHTSRHLAEFWMLEAEVAFMTS 254
Query: 685 LSSCKPVIEELLKYIFTXTXNTN 617
LS ++E+++KY N
Sbjct: 255 LSQLTSLMEDMIKYTLNSLMEQN 277
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 96.7 bits (230), Expect = 4e-21
Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
Frame = -1
Query: 561 KPFITLTYDEAQLILNTKGSGT--------GGDFNKEQELILVDHCGGPVFVTKWPKDMK 406
+PF+ L+Y++A LN T G D + E + D P+F+T +P ++K
Sbjct: 406 RPFMRLSYEDAIKYLNEHNILTPEGEQHKFGDDIAEAAERKMTDQINRPIFLTYFPLEIK 465
Query: 405 SFYMKECNNDSSKVDALDLLSPVTGEVVGGSLREDNYEKLKLKLPSERL-----HWYLEL 241
SFYMK + +++D L P GE+VGGS+R + ++L E + +W+ E
Sbjct: 466 SFYMKRVVDRPELTESVDCLMPNVGEIVGGSMRISDIQELLAAYKREGIDPAPYYWFTEQ 525
Query: 240 RKYGNIPTGGFGLGLERLLQVLCGVNNIKDTLPFPRWPHNC 118
RKYG GG GLGLER L LC +++ FPR+ C
Sbjct: 526 RKYGTTEHGGCGLGLERFLAWLCDRYTVRECCLFPRFTERC 566
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 39.1 bits (87), Expect = 8e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -1
Query: 237 KYGNIPTGGFGLGLERLLQVLCGVNNIKDTLPFP 136
+YG PTGG+G+G++RL+ L N I++ L FP
Sbjct: 542 EYGLPPTGGWGMGVDRLVMFLTDSNTIREVLLFP 575
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = -1
Query: 252 YLELRKYGNIPTGGFGLGLERLLQVLCGVNNIKDTLPF 139
++ +YG PT G+G+G++RL+ ++ G + I + LPF
Sbjct: 488 FVHALEYGLPPTAGWGMGVDRLVMLMTGQSKISEILPF 525
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 36.7 bits (81), Expect = 0.005
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Frame = -1
Query: 432 VTKWPKDMKSFYMKECNNDSSKVDALDLLSPVTGEVVGGSLREDNYEKLKLKL------P 271
+ K+P ++ FY D ++ D E++ G+ R + E L ++ P
Sbjct: 469 IDKYPSSVRPFYTMPDPEDPRYSNSYDFFMKGQ-EIMSGAQRIHDPELLVERMKALGVSP 527
Query: 270 SERLHWYLELRKYGNIPTGGFGLGLERLLQVLCGVNNIKDTLPFPRWP 127
L Y++ G P G G+GLER++ + NI+ FPR P
Sbjct: 528 DVGLQQYIDAFAIGCPPHAGGGIGLERVVMFYLNLPNIRLASSFPRDP 575
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 35.5 bits (78), Expect = 0.010
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Frame = -1
Query: 330 EVVGGSLREDNYE------KLKLKLPSERLHWYLELRKY---GNIPTGGFGLGLERLLQV 178
E+ GGS+R N + K LKLP R + L + G P GG LG +RL +
Sbjct: 502 ELGGGSIRIHNPDIQRFVLKDVLKLPENRYATFEHLIRVLSSGCPPHGGIALGFDRLAAL 561
Query: 177 LCGVNNIKDTLPFPRWPHNCDM 112
L I++ + FP+ D+
Sbjct: 562 LTNAPGIREVIAFPKTSSGADL 583
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 32.7 bits (71), Expect = 0.073
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -1
Query: 438 VFVTKWPKDMKSFYMKECNNDSS--KVDALDLLSPVTGEVVGGSLREDNYEKLKLKLPSE 265
VF+ + P ++ + + CN+ SS K+ + V + L + E +K L E
Sbjct: 407 VFIPERPAEVGKWQDELCNSLSSVRKLGKRKSIVIVAEGAIDSELNHISPEDIK-NLLVE 465
Query: 264 RLHWYLELRKYGNIPTGGFGLGLERLLQVLCGVNNIKDTL 145
RLH + G++ GG +R+L L GV+ + L
Sbjct: 466 RLHLDTRVTTLGHVQRGGIPCAYDRMLATLQGVDAVDAVL 505
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 29.5 bits (63), Expect = 0.68
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -1
Query: 417 KDMKSFYMKECNNDSSKVDALDLLSPVTGEVVGGSLREDNYEKL---KLKLPSERLHWYL 247
K++ ++ K N D S+ ++LSP + GS+R + +K+ K L ++ +L
Sbjct: 30 KEVTEWFRKTYNKDLSQSTISEILSPKYSYLDDGSVRLGDIKKIRAPKFPLLDNAVYEWL 89
Query: 246 ELRKYGNIPTGG 211
+ R+ +P G
Sbjct: 90 QQREVEGLPISG 101
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 225 IPTGGFGLGLERLLQVLCGVNNIKDTLPF 139
+P G GLG R LQ++ G +NI LP+
Sbjct: 2212 LPVFGVGLGSPRWLQMMWGTSNIGVYLPW 2240
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 225 IPTGGFGLGLERLLQVLCGVNNIKDTLPF 139
+P G G G R LQ L G +NI +PF
Sbjct: 2251 LPILGLGFGAPRWLQTLWGTSNIGIYVPF 2279
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 414 DMKSFYMKECNNDSSKVDALDLLSPVTGEVVGGSLREDNYEK 289
+M F+M ++ SS++DA + L + + +GG R NY K
Sbjct: 219 NMYDFFMVLLDSRSSRMDAENALKSLHADYIGG--RNANYRK 258
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 210 FGLGLERLLQVLCGVNNIK 154
FG+GLERL +L G+ +I+
Sbjct: 296 FGIGLERLAMILYGIPDIR 314
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 738 QSKPWSFLLQNVGPSVYPLXIPLXXGSKCN*PNTVKNVSIQ 860
Q+ P + + + YPL I G+KC PN + + S+Q
Sbjct: 633 QNPPHYEIESDASSATYPLAIAAITGTKCTVPN-IGSASLQ 672
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 478 FIKIPSGPRPLCIQNKLSFIISQSYEWLVQPNWFFIFPYQSNIYLSHLYXLXP*IYILKV 657
FIK + P + ++ F++ S W N ++I Q NI+LS + L K
Sbjct: 2296 FIKGLNSSFPSDLFSRFQFLLG-SQHWESLSNTYWIV--QLNIFLSRCFDLNQRCQFYKK 2352
Query: 658 PQLLVC 675
P+L C
Sbjct: 2353 PKLFSC 2358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,426,311
Number of Sequences: 5004
Number of extensions: 70113
Number of successful extensions: 176
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -