Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F23
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    28   1.5  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   6.2  

>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 459 VGPSYVWLMLGTAVFLVGSI 400
           VGP+Y W MLG+AV   G++
Sbjct: 510 VGPNYTWSMLGSAVGQNGNV 529


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 468 LSNVGPSYVWLMLGTAVFLVGSIRSLLL 385
           LS+ GPSY+W  L  +V ++  +R L++
Sbjct: 398 LSHGGPSYIWWALHISVCVLTILRLLVI 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,279
Number of Sequences: 5004
Number of extensions: 51287
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)