Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_F21
(1026 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 39 0.001
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.005
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.012
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 3.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 9.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 38.7 bits (86), Expect = 0.001
Identities = 41/163 (25%), Positives = 47/163 (28%), Gaps = 13/163 (7%)
Frame = +3
Query: 483 RVPXPXPAPRKXXXRPX----------PPPXXPXXLXPXXXXPXXPLPXSXPPPKXRXKX 632
R P P P R+ +P PPP P P P S PPP
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA 369
Query: 633 XXSXVXPVPXPSXXAKXXLXXPTPX*PRXLXLXXPPXXXPTPPXXFPXXXPXPXVXXXNS 812
+ P P S A P P P PP + P P P ++
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP--VPTPPSLPPSA 427
Query: 813 KXXRXXXAPPXL---XXXXXXLPPXXTXXPPLYXPXPXXPXCP 932
APP L LPP PPL P P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Score = 33.1 bits (72), Expect = 0.065
Identities = 24/94 (25%), Positives = 25/94 (26%)
Frame = +1
Query: 664 PPXXPXXXXXXPPLXDXXSXAXXHPXTXXPXLPXXSPPXXPXRXXXXSTPXRPAXXGPPP 843
PP P P S P P LP +PP P PA PP
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 844 LXXXXLAXXPXXXXXXPPFXXRXPXPPYVPXSXP 945
P PP P PP P P
Sbjct: 452 -SAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 32.7 bits (71), Expect = 0.086
Identities = 29/108 (26%), Positives = 32/108 (29%), Gaps = 7/108 (6%)
Frame = +1
Query: 664 PPXXPXXXXXXPPLXDXXSXAXXHPXTXXPXLPXXSPPXXPX--RXXXXSTPXRPAXXG- 834
P P PPL S A +P P +P S P P STP P
Sbjct: 366 PRSAPSTGRQPPPLSS--SRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 835 ----PPPLXXXXLAXXPXXXXXXPPFXXRXPXPPYVPXSXPLXWHXPP 966
PP L P PP P P +P P PP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 30.7 bits (66), Expect = 0.35
Identities = 28/113 (24%), Positives = 33/113 (29%), Gaps = 2/113 (1%)
Frame = +3
Query: 459 PPLXXTXGRVPXPXPAPRKXXXRPXPPPXXPXXLXPXXXXPXXPLPXSXPPPKXRXKXXX 638
P + GR P P + R P PPP P P P + PP
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP-ALPPLGNASRTSTPPVPTPPSLP 424
Query: 639 SXVXPVPXPSXXAKXXLXXP-TPX*PRXLXLXXP-PXXXPTPPXXFPXXXPXP 791
P PS + P P P + P P P P P P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP-PLPPAAPAP 476
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.7 bits (81), Expect = 0.005
Identities = 45/170 (26%), Positives = 50/170 (29%), Gaps = 1/170 (0%)
Frame = +3
Query: 426 SRPSXXPVFYSPPLXXTXGRVPXPXPAPRKXXXRPXPPPXXPXXLXPXXXXPXXPLPXSX 605
S P PV SP RVP K P P P P P P+P S
Sbjct: 993 SAPLSKPVSTSPAAPLA--RVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPV-PIPTST 1049
Query: 606 PPPKXRXKXXXSXVXPVPXPSXXAKXXLXXPTPX*PRXLXLXXPPXXXPTPPXXFPXXXP 785
PP S PVP PS + P+ P PP P P P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEI-PSIPAPSGAPPVPAPSGIPP--VPKPSVAAP---P 1103
Query: 786 XPXVXXXNSKXXRXXXAPPXLXXXXXXLP-PXXTXXPPLYXPXPXXPXCP 932
P APP P P + PP+ P P P
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Score = 35.5 bits (78), Expect = 0.012
Identities = 39/152 (25%), Positives = 42/152 (27%), Gaps = 6/152 (3%)
Frame = +3
Query: 495 PXPAPRKXXXRPXPPPXXPXXLXPXXXXPXXPLPXSXPP-PKXRXK----XXXSXVXPVP 659
P PAP P P P P P P P PP PK S PVP
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Query: 660 XPSXXAKXXLXXPTPX*PRXLXLXXPPXXXPTPPXXFPXXXPXPXVXXXNSKXXRXXXAP 839
PS A P P + P P P P P AP
Sbjct: 1144 KPSVAA-----PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Query: 840 PXLXXXXXXLP-PXXTXXPPLYXPXPXXPXCP 932
P P P + PP+ P P P
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 33.1 bits (72), Expect = 0.065
Identities = 25/80 (31%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Frame = +3
Query: 432 PSXXPVFYSPPLXXTXGRVPXPXPAPRKXXXRPXPPPXXPXXLXPXXXXPXXPLPXSXPP 611
P P +PP+ G P P P+ P P P P P P P PP
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV-PAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 612 -PKXRXKXXXSXVXPVPXPS 668
PK V PVP PS
Sbjct: 1200 VPKPSV-----GVPPVPPPS 1214
Score = 30.3 bits (65), Expect = 0.46
Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Frame = +3
Query: 432 PSXXPVFYSPPLXXTXGRVPXPXPAPRKXXXRPXPPPXXPXXLXPXXXXPXXPLPXSXPP 611
P P +PP+ VP P P P P P P P P P P S P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVP-PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Query: 612 ----PKXRXKXXXSXVXPVPXPSXXA 677
P+ S P P S A
Sbjct: 1248 SVSTPRSSVPSPHSNASPSPTSSSMA 1273
Score = 27.9 bits (59), Expect = 2.4
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Frame = +3
Query: 432 PSXXPVFYSPPLXXTXGRVPXPXPAPRKXXXRPXPPPXX-PXXLXPXXXXPXXPLPXSXP 608
P P PP+ P P P+ P PPP P P P P+P +
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPS---VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKA 1236
Query: 609 PP 614
PP
Sbjct: 1237 PP 1238
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.012
Identities = 19/62 (30%), Positives = 23/62 (37%)
Frame = +3
Query: 432 PSXXPVFYSPPLXXTXGRVPXPXPAPRKXXXRPXPPPXXPXXLXPXXXXPXXPLPXSXPP 611
P+ P+ PP G P P P P P PPP P + P P + P
Sbjct: 744 PAPAPIPVPPPAPIMGGP-PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPE 802
Query: 612 PK 617
PK
Sbjct: 803 PK 804
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Frame = +3
Query: 459 PP--LXXTXGRVPXPXPAPRKXXXRPXPPPXXPXXLXPXXXXPXXPLP 596
PP + T P P P P P PPP P P P P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +1
Query: 751 PXLPXXSPPXXPXRXXXXSTPXRPAXXGPPPLXXXXLAXXPXXXXXXPPFXXRXP 915
P LP PP P RPA P P +A P PP P
Sbjct: 252 PRLPH-DPPDLEGDDNIPDLPKRPASIAPQPTGASTIAPQPTGTSPSPPVEMNFP 305
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 9.9
Identities = 20/62 (32%), Positives = 21/62 (33%)
Frame = +3
Query: 426 SRPSXXPVFYSPPLXXTXGRVPXPXPAPRKXXXRPXPPPXXPXXLXPXXXXPXXPLPXSX 605
S P P +PP P P P P P PP P P P PLP S
Sbjct: 1688 STPPVRPQSAAPPQMSA----PTPPPPPMSV---PPPPSAPPMPAGPPSAPPP-PLPASS 1739
Query: 606 PP 611
P
Sbjct: 1740 AP 1741
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = +3
Query: 495 PXPAPRKXXXRPXPPPXXPXXLXPXXXXPXXPL-PXSXPPP 614
P A P PPP P + P P P P S PPP
Sbjct: 1694 PQSAAPPQMSAPTPPPP-PMSVPPPPSAPPMPAGPPSAPPP 1733
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,001
Number of Sequences: 5004
Number of extensions: 19325
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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