Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F20
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.13 
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    31   0.17 
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    30   0.52 
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   6.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 342  RASQHRGRSTNQAANNKATRHSWMGRDERNTRHTHPPRGL*SGSPEPVLLPATGP 178
            ++ +H        A++ +TR S   +D R + H H  R     S +P ++  TGP
Sbjct: 1303 KSGEHHHHHNEGHADSSSTRTSLAHQDSRKSLHRHLSRSSSRASKKPSIVSTTGP 1357


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = -3

Query: 311 TKRLTIKRQGTVGWGEMNVIHATPIH--LEGCSRDR 210
           T  L I+R+ T  WG++N++H T IH  L G +RD+
Sbjct: 24  TLPLAIRRELT--WGQVNILHTTDIHGWLAGHARDK 57


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 89  EVRTLQASCKALVEQNIPELKIDDDIENNVGPVAGSKT 202
           EV+     C A++   IP+ K+   +EN +  VAG K+
Sbjct: 61  EVQQEAVRCVAIISSKIPQDKLKSTVENLLSGVAGKKS 98


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = -3

Query: 272 WGEMNVIHATPIH--LEGCSRD 213
           WG+MN IH T  H  L G  RD
Sbjct: 45  WGQMNFIHTTDTHGWLNGHLRD 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,006
Number of Sequences: 5004
Number of extensions: 61865
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)