Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F20
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    37   0.023
AF077531-7|AAL27240.1|  418|Caenorhabditis elegans Gex interacti...    30   2.6  
AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacti...    30   2.6  
AC024847-6|AAF60855.1|  909|Caenorhabditis elegans Patched relat...    28   7.9  

>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 329  CCDALNSLAQSLTPQLRYVRGPPP 400
            CC  LN+ A+S  P L +V GPPP
Sbjct: 8521 CCQLLNNFAKSFDPSLEFVNGPPP 8544


>AF077531-7|AAL27240.1|  418|Caenorhabditis elegans Gex interacting
           protein protein10, isoform b protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 83  ENEVRTLQASCKALVEQNIPELKIDDDIENNVGPVA 190
           ENE+  +  +  AL+E+ +  L +   +  NV PVA
Sbjct: 29  ENEIPKISGTSSALIEEGLSLLNLKSSLSPNVAPVA 64


>AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacting
           protein protein10, isoform a protein.
          Length = 408

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 83  ENEVRTLQASCKALVEQNIPELKIDDDIENNVGPVA 190
           ENE+  +  +  AL+E+ +  L +   +  NV PVA
Sbjct: 29  ENEIPKISGTSSALIEEGLSLLNLKSSLSPNVAPVA 64


>AC024847-6|AAF60855.1|  909|Caenorhabditis elegans Patched related
           family protein 21 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
 Frame = -2

Query: 510 LCYWDV---PITLCRVYISI 460
           LC+WD+   P+TLC V +SI
Sbjct: 742 LCFWDLDLDPVTLCAVIVSI 761


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,766,113
Number of Sequences: 27780
Number of extensions: 347593
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)