Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F20
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    28   0.10 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   1.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.8  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   5.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.7  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   8.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 74  EQTENEVRTLQASCKALVEQNIPELKIDDDIENNVGPVAGSKT 202
           E   N ++T  + CK+L+E+ +  + +   +  ++ P A S T
Sbjct: 75  EMDSNPIKTALSVCKSLIERQVYAVVVSHPLTGDLSPAAVSYT 117


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 185 VAGSKTGSGDPDYSPRGGWVW 247
           V  +KTG+G P  +P   W W
Sbjct: 90  VITNKTGNGGPLLAPYPDWTW 110


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 288 TRHSWMGRDERNTRHTH 238
           T H WM R+  N +H H
Sbjct: 179 TPHGWMRRNVLNKQHVH 195


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 217 GIARASFTASYWADIIFYVIVNFKFRYVLFNQR 119
           GI  A+   S W +I + +I+ +   Y+L + R
Sbjct: 99  GIGYATCVLSCWTNIYYIIILAWALFYLLVSLR 131


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 217 GIARASFTASYWADIIFYVIVNFKFRYVLFNQR 119
           GI  A+   S W +I + +I+ +   Y+L + R
Sbjct: 152 GIGYATCVLSCWTNIYYIIILAWALFYLLVSLR 184


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 635 YIHKKIYFSLKLN*ILSKYHSS 570
           Y+H    FSL LN ++S ++++
Sbjct: 138 YVHPSATFSLDLNKVVSVFYTA 159


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 134 NIPELKIDDDIENNVGPVAGSKTGSGDPDYSPR 232
           NIP +KID+D + ++  +  S   +  P   PR
Sbjct: 391 NIPSVKIDEDQKCSIESIT-SVNSTSSPKPFPR 422


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 185 VAGSKTGSGDPDYSPRGGWVW 247
           V  +K G+G P   P   W W
Sbjct: 93  VISNKIGNGGPLLEPYPNWSW 113


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 83  ENEVRTLQASCKALVEQNIPELKI 154
           ENE+  L   C A+ + N+  LKI
Sbjct: 94  ENEINQLITECSAISDTNV-HLKI 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,230
Number of Sequences: 438
Number of extensions: 4755
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)