Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F19
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   2.0  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    27   2.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   3.5  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   6.0  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   8.0  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   8.0  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 179  AIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIY 313
            ++P +    PN+    P+    P A   F + L+  F+  GG++Y
Sbjct: 2299 SLPVSDRVFPNLGAWNPSEGPGPCASPCFYIALICQFVAVGGLLY 2343


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 424 SCVELPLLTRRAWLHNTRPHTQPDHTKTESNSPYLCGV 537
           SC + P+  RR WL + +P  QP+    + N+ ++ G+
Sbjct: 172 SCFQDPIRVRRDWLDSIKP-GQPETLWFDQNTQHVIGL 208


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 170 GLFAIPFTVLEIPNIK--IKKPTWLQAPSAMTTFSLVLLSYFLVT 298
           G+ A+ F     PN +  ++K  +  +PS +T+F L L SY   T
Sbjct: 24  GVLALDFVAKTFPNQENQLEKRDYTYSPSGITSFPLDLQSYTYYT 68


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 500 PKLNRILLISVAFLCILVSFFTTWI 574
           P +  +L + ++ L ++V FFT W+
Sbjct: 81  PNIYSLLRLLISVLAVIVVFFTAWV 105


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 527 SVAFLCILVSFFTTWIFMRMKLPGYLQN*FVS 622
           S+ F  IL+   T  +    KLPGYL+N F S
Sbjct: 291 SIYFSTILLREETKSLISPKKLPGYLENLFKS 322


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 173 ALPFHCFWYKSSLVTLTKIKLVDVN 99
           ALPF  +WYK +  T T +  V +N
Sbjct: 383 ALPFSRYWYKINKTTTTPVIAVWLN 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,507
Number of Sequences: 5004
Number of extensions: 69785
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)