Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F19
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 463 LHNTRPHTQPDHTKTESNSPYLCGVPMYFS 552
           LH+  P    DH++ +  + YL   P  +S
Sbjct: 120 LHDNSPSFLSDHSRDQEQNLYLTPSPQMYS 149


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 488 NPTTPKLNRILLISVAFLCILVSFFTTWIFMRMK 589
           NP+   L  +L I   FL +L +    WIF   K
Sbjct: 44  NPSLHYLLALLYILFTFLALLGNGLVIWIFCAAK 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 332  PSVGSTTDEHGHSRPVAFMPNRVNGQY 412
            P VG  T+   HSR  +    R NG+Y
Sbjct: 1761 PPVGHPTNASAHSRSGSQSMPRQNGRY 1787


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 191 TVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVT-GGIIYDVIVEPPSVG 343
           T+L     K+     +Q P     +  + +SY   T  G+IY  ++  PS G
Sbjct: 805 TILSPVREKLSSSQPMQPPQ-QNPYMFLPVSYMSTTMAGVIYPPVIGTPSTG 855


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 366  TADL*PSCRIVLMVS-TSWKVLRRASSSHSEGLAS*Y*TAHTTRPHQN*IEFSLS 527
            T  + PS  ++ + S TS  +L    S H+ G +    T H    H N  E  LS
Sbjct: 1400 TVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLS 1454


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 366  TADL*PSCRIVLMVS-TSWKVLRRASSSHSEGLAS*Y*TAHTTRPHQN*IEFSLS 527
            T  + PS  ++ + S TS  +L    S H+ G +    T H    H N  E  LS
Sbjct: 1396 TVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQLS 1450


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 375 GLLCPCSSVVEPTLGGSTI 319
           GLL P  +++EPT G + I
Sbjct: 93  GLLKPGCTIIEPTSGNTGI 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,661
Number of Sequences: 438
Number of extensions: 4817
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)