Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F18
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    30   0.44 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   9.5  

>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 195 CLPLRSSVYIEDWEDTVQNIYXKLVS 272
           C+P      +EDWE  VQ +Y  LVS
Sbjct: 43  CIPPSEDSPLEDWEQPVQRLYEVLVS 68


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = +2

Query: 488 KSFPXXXPXGEXFFXPPXKKKPPXKXFXXPPPPGEXXXFXPPP 616
           + FP     GE    PP   KP  +    PP   E     PPP
Sbjct: 195 REFPAHHEPGEHMPPPPMHHKP-GEHMPPPPMHHEPGEHMPPP 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,769
Number of Sequences: 5004
Number of extensions: 39477
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)