Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F17
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     130   1e-32
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         113   3e-27
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      38   2e-04
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.73 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   2.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  130 bits (315), Expect = 1e-32
 Identities = 58/113 (51%), Positives = 81/113 (71%)
 Frame = +3

Query: 228 TNXFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKM 407
           T  F L WNN+ +++++ F  L    D VDVTLA +GR L+AH++VLS CSPYF+E+ K 
Sbjct: 4   TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKS 63

Query: 408 NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLT 566
            P +HP++ L+DV+ S L  L++F+Y GEVNV Q  L+SF+ TAE L+V GLT
Sbjct: 64  TPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  113 bits (271), Expect = 3e-27
 Identities = 52/110 (47%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
 Frame = +3

Query: 237 FSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPT 416
           + L WNN+ +NM++ FH LL     VDVTLA     L+AHK+VLS CS YFQ++   NP 
Sbjct: 11  YCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPC 70

Query: 417 QHP-IVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 563
           +HP I+  +DV  + L+ +++F+Y+GE++V Q EL S + TA+QL++KGL
Sbjct: 71  KHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 228 TNXFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAE 335
           T  F L WNN+ +++++ F  L    D VDVTLA E
Sbjct: 4   TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 468 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGLTGNQNEE 584
           ++  +Y G VNV+ E + S++    ++  V    GN NE+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEK 82


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 586 LSSF*LPVKPLT*SCSAVLINDANSSCLTLTSP 488
           LSS      P+T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -1

Query: 363 LIYVLAITCLRQPTLRLRDLHATAGHESLLTYLRGNCSSIVKXC 232
           ++ +LA+  L    +   D H   GH++++       + I K C
Sbjct: 5   IVLLLALLTLAAGEIAHNDPHFAPGHDAIVHLFEWKWNDIAKEC 48


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -3

Query: 649 CLCCDDL-GPG 620
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,000
Number of Sequences: 438
Number of extensions: 3861
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)