Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F16
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   3.5  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   4.7  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   6.2  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   6.2  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   8.2  

>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
 Frame = +2

Query: 203 ELENDERIATIITDLITLSNEVDSVAFGPSEN------------FKKISITFDDHWYIIC 346
           ++++ ERI  ++ D IT S   DS+   P EN              K  I +  +WY + 
Sbjct: 102 DIDSSERIR-LVYDKITGSKTEDSLGICPGENPYADIISIFPLHQPKFDIKWSKYWYQLL 160

Query: 347 LSNKK 361
           L NKK
Sbjct: 161 LGNKK 165


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 678 LHPKPSVLPKQALLNGSRLRNNIVLSKRSSLTFIMPNIS*PTFLITHALIINVIHLNNI 502
           L P PS+    AL        N +L+K +  T  +P    P F I H  + N I+L  I
Sbjct: 336 LQPCPSLAEWDALRKVWLFITNKLLNKDNMYTAWIPLRHPPIFYIGHVPVFNDIYLTKI 394


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 670 WMESSYQSNLAIS--PH*SLLSIVFVYIWLNWLPLGN 774
           ++   Y +NL +S  PH S ++I++VY W   + L N
Sbjct: 277 YIVGEYLTNLYMSTLPHSSTVAIMYVYSWTGTVSLCN 313


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 30/102 (29%), Positives = 40/102 (39%)
 Frame = +2

Query: 113 KIVAAIMDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPS 292
           K V AI   +   IGY V    GAVL      E D R   ++ D  +L   +  ++    
Sbjct: 407 KDVTAISQVLWGSIGYSVGAMFGAVLAVHDSKEPDRRTILVVGD-GSLQLTITEISTCIR 465

Query: 293 ENFKKISITFDDHWYIICLSNKKIYVVKRNIHTPLRESNEIN 418
            N K           II + N   Y ++R IH      NEIN
Sbjct: 466 HNLKP----------IIFIINNDGYTIERLIHGLHASYNEIN 497


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 773 IPEHAYQYTFGCWSVAFSCVLELAL--QLSSVLTILVY 880
           + E  + Y + C++  FS  L LAL  Q + + TIL++
Sbjct: 464 LKERRWLYVYACFAHYFSFALVLALVQQFAKIQTILLF 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,057
Number of Sequences: 5004
Number of extensions: 73898
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)