Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F16
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical pr...    47   2e-05
U00047-9|AAY43977.1|  293|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81116-4|CAB03304.1|  372|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z82086-2|CAB04995.2|  309|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK180.3a protein.
          Length = 522

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 27/86 (31%), Positives = 45/86 (52%)
 Frame = +2

Query: 461 MSSLENASFNILIQILFRCITFIINAWVIRNVGHEILGIMNVRXXXXXXXXXXXSREPFN 640
           MS   +   N+  Q++ R I+F IN +++R + +++LG++NVR           +REP  
Sbjct: 1   MSLFSSLVHNVRGQLIARIISFAINMYLLRRINNDVLGLVNVRLTLLYSSILFLTREPLR 60

Query: 641 RACLGRTDGFGWSHLINQIWLSVPIS 718
           +A + R         IN +WLS  IS
Sbjct: 61  KAEIIRG---SLPKFINLLWLSPIIS 83


>U00047-9|AAY43977.1|  293|Caenorhabditis elegans Hypothetical
           protein ZK418.10 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 577 YAQYFMTNISDHPCINNKCNTPE*YLY*NIERRVFKATHQNIS 449
           Y QY+   + +H C+ N+ N P  Y       ++ + THQ ++
Sbjct: 229 YQQYYSAALINHCCLTNQQNAPSRYSELLSLYQIIEETHQKVN 271


>Z81116-4|CAB03304.1|  372|Caenorhabditis elegans Hypothetical
           protein T06C12.4 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 433 FLILHINFITFSEWSMYISFYNINLFIRKTD 341
           F + +I + T  E   YI FY  +L+I+K+D
Sbjct: 332 FGVYNIRYTTSDERLFYIRFYRSSLYIKKSD 362


>Z82086-2|CAB04995.2|  309|Caenorhabditis elegans Hypothetical
           protein ZK228.3 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 233 IITDLITLSNEVDSVAFGPSENFKKISITFDDHWYIICLSNKK 361
           +   LI LS E++  A  P + ++  S  FD++W+I  +  +K
Sbjct: 11  VFDQLINLSGELNGWAHQPYD-YRFYSENFDEYWFIAVVDKEK 52


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
           protein Y53C10A.9 protein.
          Length = 1564

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 724 LSIVFVYIWLNWLPLGNPGTCISVYL 801
           LS+ F + WL W+PL NP   + +++
Sbjct: 318 LSLEFEFDWLFWVPLLNPNYSLKLFV 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,953,844
Number of Sequences: 27780
Number of extensions: 397731
Number of successful extensions: 883
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)