Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F15
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.025
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 30/107 (28%), Positives = 32/107 (29%), Gaps = 5/107 (4%)
 Frame = +2

Query: 455 PXXPPAPGXXXGGXGXXPPXGGXXVXPKXGGXPXKKLXTKXPPKGXXPXKGXXXGXFPXA 634
           P  PP P     G    PP G     P     P     T   P    P         P A
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP---PRSAPSTGRQPP---PLSSSRAVSNPPA 390

Query: 635 PPP*QPXXKSXXNSKXGNPXXTXKXP-----GFPPXXPPRXPPXSXP 760
           PPP  P   +      GN   T   P       PP  PP  PP + P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 18/45 (40%), Positives = 19/45 (42%)
 Frame = +1

Query: 733 PPXPPXVPXLAXNRIPVPLSPXGXGXPFPXPXPVXFPXRXRWPXP 867
           PP PP     A   IP+P  P G   P P P P   P   R P P
Sbjct: 337 PPPPPPPRSNAAGSIPLP--PQGRSAP-PPPPPRSAPSTGRQPPP 378



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
 Frame = +1

Query: 637 PPLTTXXKIXPQFKGGKPRXDXKNXXVSPXKXPPXPPXVPXLAXNRIPVPLS-PXGXGXP 813
           PP+ T   + P      P     +  +     PP PP  P        +P + P     P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 814 FPXPXPVXFP 843
            P P P   P
Sbjct: 475 APPPAPAPAP 484



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = +2

Query: 659 KSXXNSKXGNPXXTXKXPGFPPXXPPRXPPXSXPXPXTGYLSPFXPXGXG 808
           K+  N   G P  T   P  PP  P   PP   P        P  P   G
Sbjct: 214 KAYLNESAGTPTSTSAPP-IPPSIPSSRPPERVPSLSAPAPPPIPPPSNG 262


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = +1

Query: 727 KXPPXPPX---VPXLAXNRIPVPLSPXGXGXPFPXPXP 831
           K PP PP    VP  A   IPVP      G P P P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/64 (32%), Positives = 23/64 (35%)
 Frame = -2

Query: 642 GGGAXGKXPXKXPFXGFXPFGGXLVKSFXXGXPPXLGXTXXPPLGGXXPXPPXXXPGAGG 463
           GGG+ G  P    F GF  FGG   +    G     G       GG    P     G GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGG---EGHHHGGHGGFGGGP----GGFEGGPGGFGGGPGG 246

Query: 462 XXGG 451
             GG
Sbjct: 247 FGGG 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.147    0.502 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,637
Number of Sequences: 5004
Number of extensions: 22414
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)