Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F15
         (922 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    31   0.065
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   4.3  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   5.6  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 30.7 bits (66), Expect = 0.065
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 710 PGFPPXXPPRXPPXSXPXPXTGYLSPFXPXGXGGPFPXP 826
           PG PP      PP +   P TG  +   P   GG +P P
Sbjct: 183 PGMPPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQP 221



 Score = 27.1 bits (57), Expect = 0.80
 Identities = 20/71 (28%), Positives = 24/71 (33%)
 Frame = +1

Query: 706 NXXVSPXKXPPXPPXVPXLAXNRIPVPLSPXGXGXPFPXPXPVXFPXRXRWPXPSGGXGX 885
           N  + P      PP          P    P   G  +P P  V  P R + P P    G 
Sbjct: 182 NPGMPPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMP-PGAVPGM 240

Query: 886 NPXLTQPXPLS 918
            P + QP P S
Sbjct: 241 QPGM-QPRPPS 250



 Score = 25.0 bits (52), Expect = 3.2
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +3

Query: 423 GXXXGPXSXXPPXNPXPPXXRXGXXVSPPPXXXXXFXPXXGXXP 554
           G   GP    PP N  PP  R G    P P       P     P
Sbjct: 184 GMPPGPQMMRPPGNVGPP--RTGTPTQPQPPRPGGMYPQPPGVP 225


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 849 PXWEXYRXGXGKGPPXPXGXKGDR 778
           P W+        GP  P G KGDR
Sbjct: 576 PVWKDRGPSGPSGPLGPQGEKGDR 599


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +2

Query: 686 NPXXTXKXPGFPPXXPPRXPPXSXPXPXTG-YLSPFXPXGXGGP 814
           NP       GFP     + PP   P P  G   SP      GGP
Sbjct: 563 NPAQLRFPAGFPNLPNAQPPPAPPPPPPMGPPPSPLAGGPLGGP 606


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.317    0.147    0.502 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,193
Number of Sequences: 2352
Number of extensions: 7573
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100055142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)