Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_F14
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 44 3e-05
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 29 1.2
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 29 1.2
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 29 1.2
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 27 4.8
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 27 4.8
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 8.4
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 26 8.4
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 44.0 bits (99), Expect = 3e-05
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Frame = +3
Query: 237 LEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFA 416
L + V + A EL+++ + +P F +++ +P +++LE L+ L + +
Sbjct: 196 LLEAVKMDNSTADEAVRELVQRAVNSPKYFFFDDIVTLPPVQQLEQST----LQLLGILS 251
Query: 417 YGTYKDYI----ENKSDYLELTTVQ---CKKLQHLTIATLATQ--EKCIPYSVLLEELDI 569
G DY+ EN + + +K++ LTIA+LATQ + Y + + L I
Sbjct: 252 GGMTDDYVSWVAENHAHCQHQKFDEDAIARKMKLLTIASLATQAPNNTLSYGDVAKSLKI 311
Query: 570 KNVRDLEDLIIEAIYADIIHGKLDQECKRVEV 665
+ ++E II+ I A ++ G++ Q K + +
Sbjct: 312 -DENEVELWIIDVIRAGLVEGRMSQLTKTLSI 342
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +3
Query: 336 ELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATL 515
E+ P L S P + ++T NLF K Y ++ DYL + + K + T + L
Sbjct: 379 EITNQPARVALISIPSKSTIRTKNLFNVSDCKLYWQSNGDYLCVKVDRHTKTKKSTFSNL 438
Query: 516 ---ATQEKCIPYSVLLEELDIKNV 578
+EK IP +E +D+K+V
Sbjct: 439 EIFRIREKNIP----VEVVDLKDV 458
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 634 SWTRNVNVWKWTWPLGRDARLED--AASIAD---VLADWCNACEAVLNSVDQPXXRANXQ 798
+W N+N W+ P+ +D R+ D SIAD VL+ NA + + D P
Sbjct: 235 AWKNNMNQWELLNPVYKDVRVFDWRPYSIADRNAVLSRMSNAFDNMQLPPDAPERSLLVS 294
Query: 799 KQK 807
KQK
Sbjct: 295 KQK 297
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 381 YATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCI-PYSVLLE 557
YA + YK Y+E +SDY EL K+L + + + CI S L+
Sbjct: 161 YAKSAHSTKTVVDALYKSYLEKQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLIT 220
Query: 558 ELD 566
L+
Sbjct: 221 SLE 223
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 718 DVLADWCNACEAVLNSVDQ 774
DV +DW +AC+AV N +
Sbjct: 68 DVYSDWIDACDAVANQAKE 86
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +3
Query: 465 LTTVQCKKLQHLTIATLATQEKCIP---YSVLLEELD 566
+ ++ CK+LQ L + Q KCI Y V+L++++
Sbjct: 1 MPSIDCKRLQKLAPKSPENQSKCISRLRYMVMLDQVE 37
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 459 LELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 596
LE V+ KL+H T+ QE C + ++L+ + + L+ L
Sbjct: 295 LEECLVELDKLEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQL 340
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 8.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = +1
Query: 697 EDAASIADVLADWCNACEAVLNSVDQ 774
+D + D A WC C+A+ +Q
Sbjct: 17 QDKLVVVDFFATWCGPCKAIAPKFEQ 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,805
Number of Sequences: 5004
Number of extensions: 59343
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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