Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F12
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    49   9e-07
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    49   9e-07
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    49   9e-07
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    31   0.25 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   9.5  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   9.5  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 24/45 (53%), Positives = 25/45 (55%)
 Frame = +2

Query: 92  MARTKQTARKSTGGKAPRNNSRRKLPEKAHRRPAALXNPQNXEPG 226
           MARTKQTARKSTGGKAPR     K   KA      +  P    PG
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45



 Score = 32.3 bits (70), Expect = 0.083
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +3

Query: 129 GGKLRATTRDESCPKKRTGDXXXXXTPKXXNPGXVTLKXIRGFPKSPGLLIPKLPVXKI 305
           GGK           +K          P    PG V L+ IR + KS  LLI KLP  ++
Sbjct: 13  GGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL 71


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 24/45 (53%), Positives = 25/45 (55%)
 Frame = +2

Query: 92  MARTKQTARKSTGGKAPRNNSRRKLPEKAHRRPAALXNPQNXEPG 226
           MARTKQTARKSTGGKAPR     K   KA      +  P    PG
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45



 Score = 32.3 bits (70), Expect = 0.083
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +3

Query: 129 GGKLRATTRDESCPKKRTGDXXXXXTPKXXNPGXVTLKXIRGFPKSPGLLIPKLPVXKI 305
           GGK           +K          P    PG V L+ IR + KS  LLI KLP  ++
Sbjct: 13  GGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL 71


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 24/45 (53%), Positives = 25/45 (55%)
 Frame = +2

Query: 92  MARTKQTARKSTGGKAPRNNSRRKLPEKAHRRPAALXNPQNXEPG 226
           MARTKQTARKSTGGKAPR     K   KA      +  P    PG
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPG 45



 Score = 32.3 bits (70), Expect = 0.083
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +3

Query: 129 GGKLRATTRDESCPKKRTGDXXXXXTPKXXNPGXVTLKXIRGFPKSPGLLIPKLPVXKI 305
           GGK           +K          P    PG V L+ IR + KS  LLI KLP  ++
Sbjct: 13  GGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL 71


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 183 GDXXXXXTPKXXNPGXVTLKXIRGFPKSPGLLIPKLPVXKI 305
           GD       K   PG   L+ IR + +S  LLI +LP  +I
Sbjct: 11  GDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRI 51


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 88  GNGSNEADRPKVDRGESSAQQLATKAARKSAPATGGVXKPPK 213
           G+  N  +RP +DR  SS  Q  +  +    P  G + +P +
Sbjct: 179 GSPFNHINRPVLDRSPSSFSQSRSAVSGNMNPGVGTLQQPQR 220


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 63  INLLN-RFYWKWLERSRPPESRQ 128
           IN++  +F W+WL+R + P + Q
Sbjct: 499 INIIGPKFLWQWLQRLKSPANLQ 521


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 38  LRILGYA-FDQFIKSVLLEMARTKQTARKSTGGKAPRNNS 154
           L  LGY  FD F+K V+ +  RT ++   + G   P   +
Sbjct: 65  LESLGYKDFDSFLKDVIPDSVRTPESQLMAFGSVNPNEKN 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,203
Number of Sequences: 5004
Number of extensions: 30437
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)