Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_F10
(845 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 32 0.45
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.4
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 30 1.8
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 30 1.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.1
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 29 4.2
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.2
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 5.5
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 5.5
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 5.5
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 29 5.5
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 29 5.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 7.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 7.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 7.6
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 32.3 bits (70), Expect = 0.45
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Frame = -2
Query: 619 GXGXPPP---PPXXFFXXXPPPXXXXXXX------PPXXXXXXXXXXFXPPPXGGXKXXX 467
G G PPP PP F PPP PP F PPP GG
Sbjct: 723 GVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMP 782
Query: 466 XXXXFXGG 443
F GG
Sbjct: 783 PPPSFRGG 790
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -2
Query: 619 GXGXPPPPPXXFFXXXPPPXXXXXXXPPXXXXXXXXXXFXPPPXG 485
G G PPPP F PPP PP PPP G
Sbjct: 79 GPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPP-PPPPSG 122
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 625 GGGXGXPPPPPXXFFXXXPPP 563
GGG G PPPP + PPP
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPP 695
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 625 GGGXGXPPPPPXXFFXXXPPP 563
GGG G PPPP + PPP
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPP 695
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = -2
Query: 613 GXPPPPPXXFFXXXPPPXXXXXXXPPXXXXXXXXXXFXPPPXGG 482
G PPPPP PPP PP PP GG
Sbjct: 278 GSPPPPPAG--GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 319
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -2
Query: 619 GXGXPPPPPXXFFXXXPPPXXXXXXXPPXXXXXXXXXXFXPPP 491
G G PPPPP PPP PP PPP
Sbjct: 251 GSGSPPPPPAA--GSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = -2
Query: 613 GXPPPPPXXFFXXXPPPXXXXXXXPPXXXXXXXXXXFXPPPXGG 482
G PPPPP PPP PP PP GG
Sbjct: 299 GSPPPPPAG--GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 340
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -2
Query: 619 GXGXPPPPPXXFFXXXPPPXXXXXXXPPXXXXXXXXXXFXPPP 491
G G PPPPP PPP PP PPP
Sbjct: 272 GSGSPPPPPAA--GSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = -2
Query: 613 GXPPPPPXXFFXXXPPPXXXXXXXPPXXXXXXXXXXFXPPPXGG 482
G PPPPP PPP PP PP GG
Sbjct: 284 GSPPPPPAG--GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGG 325
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -2
Query: 619 GXGXPPPPPXXFFXXXPPPXXXXXXXPPXXXXXXXXXXFXPPP 491
G G PPPPP PPP PP PPP
Sbjct: 257 GSGSPPPPPAA--GSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 619 GXGXPPPPPXXFFXXXPPP 563
G G PPPPP + PPP
Sbjct: 92 GLGPPPPPPHYYTQPPPPP 110
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = -2
Query: 604 PPPPXXFFXXXPPPXXXXXXXPPXXXXXXXXXXFXPPP 491
PPPP F PPP P F PPP
Sbjct: 219 PPPPIEQFGAIPPPNATIPSFPTSNAASPPVQEFAPPP 256
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 564 GGGXXXKXXXGGGGGXPXPPP 626
GGG + GGGGG P PP
Sbjct: 623 GGGGPPRGPGGGGGGGPTGPP 643
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = -2
Query: 625 GGGXGXPPPP--PXXFFXXXPPP 563
GGG G PPPP P + PPP
Sbjct: 44 GGGFGPPPPPFGPVGYALPPPPP 66
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 564 GGGXXXKXXXGGGGGXPXPPP 626
GGG + GGGGG P PP
Sbjct: 623 GGGGPPRGPGGGGGGGPTGPP 643
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 625 GGGXGXPPPPPXXFFXXXPPP 563
GG PPPPP FF PP
Sbjct: 1010 GGPPPPPPPPPADFFANIAPP 1030
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 625 GGGXGXPPPPPXXFFXXXPPP 563
GG PPPPP FF PP
Sbjct: 249 GGPPPPPPPPPADFFANIAPP 269
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 625 GGGXGXPPPPPXXFFXXXPPP 563
GG PPPPP F PPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPP 786
Score = 23.4 bits (48), Expect(2) = 7.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 625 GGGXGXPPPPP 593
GG G PPPPP
Sbjct: 778 GGFKGGPPPPP 788
Score = 23.0 bits (47), Expect(2) = 7.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 613 GXPPPPPXXFFXXXPP 566
G PPPPP F P
Sbjct: 783 GPPPPPPPGMFAPMAP 798
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 625 GGGXGXPPPPPXXFFXXXPPP 563
GG PPPPP F PPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPP 786
Score = 23.4 bits (48), Expect(2) = 7.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 625 GGGXGXPPPPP 593
GG G PPPPP
Sbjct: 778 GGFKGGPPPPP 788
Score = 23.0 bits (47), Expect(2) = 7.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 613 GXPPPPPXXFFXXXPP 566
G PPPPP F P
Sbjct: 783 GPPPPPPPGMFAPMAP 798
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 625 GGGXGXPPPPPXXFFXXXPPP 563
GG PPPPP F PPP
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPP 369
Score = 23.4 bits (48), Expect(2) = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 625 GGGXGXPPPPP 593
GG G PPPPP
Sbjct: 361 GGFKGGPPPPP 371
Score = 23.0 bits (47), Expect(2) = 7.6
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -2
Query: 613 GXPPPPPXXFFXXXPP 566
G PPPPP F P
Sbjct: 366 GPPPPPPPGMFAPMAP 381
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,191,419
Number of Sequences: 27780
Number of extensions: 151656
Number of successful extensions: 803
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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