Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F09
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...   165   6e-42
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.40 

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score =  165 bits (402), Expect = 6e-42
 Identities = 87/213 (40%), Positives = 117/213 (54%)
 Frame = +2

Query: 194 SGEGAQFMTRXXXXXXXXXXXXDFRRICILKGIYPREPRNRKRAQKGAGGIKTLYHTKDI 373
           +G    ++TR            DFRRICILKG+YPREP+N+K+A KG+    T Y+TKDI
Sbjct: 10  AGAARIYITRNQALKKLQLTLADFRRICILKGVYPREPKNKKKANKGSTAPVTFYYTKDI 69

Query: 374 KFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDYPEINIDHIVKERYPTFVXX 553
           ++LLHEPI+ K RE KV+ +K+ +A  + E    ++     P  ++DHI+KERYPTF   
Sbjct: 70  QYLLHEPIVQKFREYKVFARKLSKALGKGELETAKRLEARKPTYSLDHIIKERYPTFHDA 129

Query: 554 XXXXXXXXXXXXXXSTFPSLKKVPRDQSFLCRRLTVEFMHAVIAAKALRKVFVSVKGFYY 733
                         ST P   K+       C RL  EF H VI + +LRK F+S+KG YY
Sbjct: 130 LKDIDDALSMLFLFSTMPVTDKIGAATVANCERLCAEFQHYVIRSNSLRKAFLSIKGIYY 189

Query: 734 QVEFEGQTIHGLFHIISHSSHKQDEVDFKIMAT 832
           Q E  G+ I  +       S   D VDF+IM T
Sbjct: 190 QAEIFGEQITWIVPYKFAQSVPTD-VDFRIMHT 221


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 547 NKRGVSFLYYVINVYFWIVPQKLS 476
           NK+G+S+   VI  + W+V QKLS
Sbjct: 278 NKKGLSYFKAVIRAFEWLVEQKLS 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,932,578
Number of Sequences: 5004
Number of extensions: 87385
Number of successful extensions: 190
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)