Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_F08
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 0.017
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.11
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.12
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 0.69
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.86
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.5
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 23 2.7
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.6
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 23 4.9
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 741 PPPPPPPP 764
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect(3) = 0.017
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 742 PPPPPPPP 765
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 741 PPPPPPPP 764
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.6 bits (56), Expect(2) = 0.056
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 742 PPPPPPPP 765
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 25.0 bits (52), Expect(2) = 0.056
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 649 GGXXPPPPPP 678
GG PPPPPP
Sbjct: 303 GGLPPPPPPP 312
Score = 24.2 bits (50), Expect(3) = 0.017
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 637 GGXGGGXXPPPPPP 678
G G PPPPPP
Sbjct: 298 GDSANGGLPPPPPP 311
Score = 21.0 bits (42), Expect(3) = 0.017
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 853 PPPPPP 870
PPPPPP
Sbjct: 309 PPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 741 PPPPPPPP 764
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect(2) = 0.71
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 742 PPPPPPPP 765
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 741 PPPPPPPP 764
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect(3) = 0.11
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 742 PPPPPPPP 765
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 745 PPPPPPP 765
PPPPPPP
Sbjct: 238 PPPPPPP 244
Score = 23.4 bits (48), Expect(3) = 0.81
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 742 PPPPPPPP 765
P PPPPPP
Sbjct: 236 PAPPPPPP 243
Score = 21.0 bits (42), Expect(3) = 0.11
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 661 PPPPPP 678
PPPPPP
Sbjct: 189 PPPPPP 194
Score = 21.0 bits (42), Expect(3) = 0.81
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 661 PPPPPP 678
PPPPPP
Sbjct: 191 PPPPPP 196
Score = 21.0 bits (42), Expect(2) = 4.2
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 661 PPPPPP 678
PPPPPP
Sbjct: 192 PPPPPP 197
Score = 21.0 bits (42), Expect(2) = 0.71
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 853 PPPPPP 870
PPPPPP
Sbjct: 192 PPPPPP 197
Score = 21.0 bits (42), Expect(3) = 0.11
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 853 PPPPPP 870
PPPPPP
Sbjct: 238 PPPPPP 243
Score = 21.0 bits (42), Expect(3) = 0.81
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 853 PPPPPP 870
PPPPPP
Sbjct: 239 PPPPPP 244
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = +1
Query: 661 PPPPPPXFFFXXXXXXX--GXXXXXXXXXPPPPPPPPG 768
PPPPPP PPPPPPPPG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 29.9 bits (64), Expect = 0.49
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 649 GGXXPPPPPPXFFFXXXXXXXGXXXXXXXXXPPPPPPPP 765
GG PPPPPP PPPPPPPP
Sbjct: 759 GGPPPPPPPPGV--------------AGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.65
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +3
Query: 651 GGXXPPPPPXFFFFXXXGXXGXXX*XXXXXPPPPPPPP 764
GG PPPPP G G PPPPPPPP
Sbjct: 759 GGPPPPPPPP-------GVAGAGP------PPPPPPPP 783
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 637 GGXGGGXXPPPPPP 678
G G G PPPPPP
Sbjct: 769 GVAGAGPPPPPPPP 782
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 741 PPPPPPPP 764
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect(2) = 0.69
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 742 PPPPPPPP 765
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 741 PPPPPPPP 764
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 742 PPPPPPPP 765
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 21.0 bits (42), Expect(2) = 0.69
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 853 PPPPPP 870
PPPPPP
Sbjct: 948 PPPPPP 953
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.86
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +1
Query: 649 GGXXPPPPPPXFFFXXXXXXXGXXXXXXXXXPPPPPPPPG 768
G PPPPPP F PPPPPPPG
Sbjct: 7 GNPPPPPPPPGF---------------EPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 741 PPPPPPPP 764
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 661 PPPPPPXFFFXXXXXXXGXXXXXXXXXPPPPPPPP 765
PPPPPP G PPPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSL--PPPPPPP 343
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 637 GGXGGGXXPPPPPPXFFFXXXXXXXGXXXXXXXXXPPPPPPPP 765
G PPPPPP G PPPPPP
Sbjct: 330 GSSNSSLPPPPPPP------RSNAAGSIPLPPQGRSAPPPPPP 366
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 23.0 bits (47), Expect(2) = 2.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 742 PPPPPPPP 765
PPPPPP P
Sbjct: 356 PPPPPPMP 363
Score = 22.6 bits (46), Expect(2) = 2.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 652 GXXPPPPPP 678
G PPPPPP
Sbjct: 353 GSRPPPPPP 361
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 741 PPPPPPPP 764
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 742 PPPPPPPP 765
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 741 PPPPPPPP 764
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 742 PPPPPPPP 765
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 23.4 bits (48), Expect(2) = 4.9
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 640 GXGGGXXPPPPPP 678
G GG PPPPP
Sbjct: 282 GPGGAPLVPPPPP 294
Score = 21.4 bits (43), Expect(2) = 4.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 742 PPPPPPPPG 768
P PPPPPG
Sbjct: 287 PLVPPPPPG 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,776
Number of Sequences: 5004
Number of extensions: 45717
Number of successful extensions: 525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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