Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_F06
(1035 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 25 0.025
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 28 0.12
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 25 0.84
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 25 1.1
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 25.4 bits (53), Expect(2) = 0.025
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 578 PPPPPPPXXG 607
PPPPPPP G
Sbjct: 1356 PPPPPPPSSG 1365
Score = 23.8 bits (49), Expect = 2.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 578 PPPPPPP 598
PPPPPPP
Sbjct: 1355 PPPPPPP 1361
Score = 23.8 bits (49), Expect = 2.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 883 PPPPPPP 903
PPPPPPP
Sbjct: 1355 PPPPPPP 1361
Score = 23.8 bits (49), Expect = 2.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 883 PPPPPPP 903
PPPPPPP
Sbjct: 1356 PPPPPPP 1362
Score = 23.4 bits (48), Expect = 3.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 476 PPPXPPPP 453
PPP PPPP
Sbjct: 1355 PPPPPPPP 1362
Score = 23.4 bits (48), Expect(2) = 0.025
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 572 PXPPPPPP 595
P PPPPPP
Sbjct: 1355 PPPPPPPP 1362
Score = 23.4 bits (48), Expect = 3.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 574 PXPPPPPP 597
P PPPPPP
Sbjct: 1355 PPPPPPPP 1362
Score = 22.2 bits (45), Expect = 7.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -1
Query: 537 PPPPPXXPGXG 505
PPPPP P G
Sbjct: 1355 PPPPPPPPSSG 1365
Score = 22.2 bits (45), Expect = 7.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 540 PPPPPPXXPG 511
PPPPPP G
Sbjct: 1356 PPPPPPPSSG 1365
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 28.3 bits (60), Expect = 0.12
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +1
Query: 166 PPPXXPPPXGXPXP-PXXPPPGXXPPPXGGPXPXXGXGXPP 285
P P P P P P G P P GP P G PP
Sbjct: 16 PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56
Score = 24.6 bits (51), Expect = 1.5
Identities = 11/38 (28%), Positives = 12/38 (31%)
Frame = +2
Query: 884 PPPPPXPTXXXXXXXXXPXPXXAPPPXPPXGXXXXXXP 997
P P P + P P PPP P G P
Sbjct: 23 PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60
Score = 23.8 bits (49), Expect = 2.6
Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Frame = +1
Query: 163 PPPPXXPPPXGXP-XPPXXPPPGXXPPPXGG 252
P P PPP G P PP P P G
Sbjct: 40 PNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70
Score = 22.6 bits (46), Expect = 5.9
Identities = 10/32 (31%), Positives = 10/32 (31%)
Frame = +2
Query: 578 PPPPPPPXXGXXXXXXXPPPPPXXXXPXXPPP 673
P P P P PP P P PP
Sbjct: 21 PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 25.4 bits (53), Expect = 0.84
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 937 PPXXXPPPPPP 969
PP PPPPPP
Sbjct: 338 PPKPAPPPPPP 348
Score = 24.6 bits (51), Expect = 1.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 572 PXPPPPPPPXXG 607
P PPPPPP G
Sbjct: 341 PAPPPPPPSSSG 352
Score = 23.0 bits (47), Expect = 4.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 571 PPXPPPPPP 597
PP P PPPP
Sbjct: 338 PPKPAPPPP 346
Score = 23.0 bits (47), Expect = 4.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 572 PXPPPPPPP 598
P P PPPPP
Sbjct: 339 PKPAPPPPP 347
Score = 22.2 bits (45), Expect = 7.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 540 PPPPPPXXPG 511
PPPPPP G
Sbjct: 343 PPPPPPSSSG 352
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 25.0 bits (52), Expect = 1.1
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 513 RGXXGGGGGGXXXXXXXXXXPXPPPPPP 596
RG G G P PPPPPP
Sbjct: 1837 RGSVGRRSVGSARNIPVSGSPEPPPPPP 1864
Score = 23.4 bits (48), Expect = 3.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 574 PXPPPPPP 597
P PPPPPP
Sbjct: 1857 PEPPPPPP 1864
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.310 0.164 0.623
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 342,498
Number of Sequences: 438
Number of extensions: 18594
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34588554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
- SilkBase 1999-2023 -