Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_F05
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 197 2e-51
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 182 5e-47
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit... 28 2.1
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 28 2.1
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.7
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 3.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.8
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 26 6.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.3
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 26 8.4
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 197 bits (481), Expect = 2e-51
Identities = 109/231 (47%), Positives = 149/231 (64%), Gaps = 12/231 (5%)
Frame = +1
Query: 163 QPKNKVCI--VGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIEGK----KLTEI 321
+PK ++ I VGSGNWG+AIAKI G NA A +F +V MWV+EE IE K KLTE+
Sbjct: 18 RPKKRLSIGVVGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEV 77
Query: 322 INETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTA 501
NE HENVKYLPG + P NV+AVPDV E A+ AD+L+FVVPHQF+ +C ++G I+P A
Sbjct: 78 FNEAHENVKYLPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGA 137
Query: 502 AALSLIKGFDIAEGGGIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETXIGLSGRN 681
+S IKG +++ G+ L S +I+ L I C VL GAN+A+EVA E+FCET IG + N
Sbjct: 138 VGISCIKGVAVSK-EGVRLYSEVISEKLGIYCGVLSGANVANEVAREQFCETTIGFNPPN 196
Query: 682 AGSVNAGYHTDRLLQGRGWWTMKN-----PFKIFGTVKNIVAVGAGFVDGL 819
V+ + R ++++ + + G +KN+VA+ GF DGL
Sbjct: 197 --EVDIPREQIAAVFDRPYFSVVSVDDVAGVALGGALKNVVAMAVGFADGL 245
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 182 bits (444), Expect = 5e-47
Identities = 111/233 (47%), Positives = 143/233 (61%), Gaps = 12/233 (5%)
Frame = +1
Query: 178 VCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEII--EGKK--LTEIINETHEN 342
V I+GSGNWG+AIAKI G NA + + F +V MW+YEE I EGK+ LTE+ N THEN
Sbjct: 27 VGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFNTTHEN 86
Query: 343 VKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIK 522
VKYL G K PSNV A PD+ + +D+L++V+PHQFV IC+ L G +K A A+S IK
Sbjct: 87 VKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAISCIK 146
Query: 523 GFDIAEGGGIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETXIGLSGRNAGSVNAG 702
G + + + L S II + C VL GANIASEVA+EKFCET IG + SVN
Sbjct: 147 GVSVTK-DRVRLFSDIIEENTGMYCGVLSGANIASEVAQEKFCETTIGYLPNS--SVNPR 203
Query: 703 Y--HTDRLLQGRGWWTMK-----NPFKIFGTVKNIVAVGAGFVDGLGYXDTQR 840
Y T + L R ++ + + G +KNIVAV AG +DGL D +
Sbjct: 204 YTPKTIQALFNRPYFRVNIVEDVPGVALGGALKNIVAVAAGIIDGLELGDNTK 256
>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
7a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -3
Query: 603 YSTGNF*ASCNNM*YKIDATTFGYIKSLNQ--RQSS---CSWLYFSKQSRADSSD 454
YS F C+N+ +++DA T KS + R SS ++ F K+ R D +D
Sbjct: 148 YSLDRFIERCSNILFQLDAGTPSVSKSFKRASRMSSSDGIDYMVFDKRPRPDDTD 202
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 550 IDLISHIITRCLKIPCAVLMGANIASEVAEEKFC 651
+D+ + ++T C+ P +VL+ AS +A K C
Sbjct: 152 LDIAAEVVTACINAPDSVLVDILAASIIAGAKAC 185
>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 75
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 353 RYLTFS*VSLIISVNFFPSIISSYTHIVTLSSK 255
RY TFS + L+ N FP ISS+ ++T K
Sbjct: 26 RYATFSILKLV-EYNCFPGFISSFHSLLTYRKK 57
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 448 QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 540
+ +R IC T+ G ++ + + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.8
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -1
Query: 821 PRPSTKPAPTATMFLTVPNILNGFFXVHHPRP*SSLSV*YPALTEPALRPDNPMXVSQ-N 645
P PS+ PAP A + P + N V P S++ P+ PA P + + SQ +
Sbjct: 1470 PAPSSAPAPPAPVSQLPPAVPN----VPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSS 1525
Query: 644 FSSATSDAILAP 609
F+ S A AP
Sbjct: 1526 FAHVPSPAPPAP 1537
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 317 SVNFFPSIISSYTHIVTLSSKFDR 246
+++ PSIISSYT + L++K R
Sbjct: 206 TISALPSIISSYTSLAPLNTKLYR 229
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 280 VYEEIIEGKKLTEIINETHENVKYL 354
+ ++ + +K E++NETHE K+L
Sbjct: 969 IQQKYLASEKTLEMMNETHEQFKHL 993
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 8.4
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Frame = +1
Query: 349 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVPH----QFVR---TICSTLLGKIKPTAA 504
Y+PG + V AV D VEA K D ++++ P Q+ T+ S + KI A
Sbjct: 59 YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIA 118
Query: 505 ALSLIKG 525
+ +L++G
Sbjct: 119 SAALLQG 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,102
Number of Sequences: 5004
Number of extensions: 70462
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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