Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_F05
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 153 2e-37
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 63 3e-10
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 34 0.13
12_01_0515 + 4081373-4081622,4081725-4081867,4082061-4082219,408... 29 5.0
06_03_0298 - 19272257-19273714 29 5.0
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 5.0
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 29 6.6
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 28 8.8
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 153 bits (371), Expect = 2e-37
Identities = 69/130 (53%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = +1
Query: 151 MADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIE-GKKLTEIIN 327
M + KN V ++GSGNWGS ++++ N A L +F D V MWV+EEI+ GKKL+E IN
Sbjct: 1 MENGHAKNLVAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESIN 60
Query: 328 ETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAA 507
+ +EN KYLPG KL +NV+A PD+ A KDA++L+FV PHQFV IC L+GK++P
Sbjct: 61 QANENCKYLPGIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEG 120
Query: 508 LSLIKGFDIA 537
+SLIKG +IA
Sbjct: 121 ISLIKGMEIA 130
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 760 KIFGTVKNIVAVGAGFVDGL 819
++ GT+KN+VA+ AG VDGL
Sbjct: 172 ELCGTLKNVVAIAAGLVDGL 191
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 63.3 bits (147), Expect = 3e-10
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 16/231 (6%)
Frame = +1
Query: 175 KVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVKYL 354
KV ++G G++G+A+A V A L V+M + ++++ IN +H N KYL
Sbjct: 109 KVVVLGGGSFGTAMAAQVAAKKADLE-----VSMLLRDDLV-----CRSINHSHINCKYL 158
Query: 355 PGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDI 534
H+LP N+ A +A AD VP QF + + + P +SL KG ++
Sbjct: 159 RDHRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHVDPKLPFISLSKGLEL 218
Query: 535 AEGGGIDLISHIITRCL---KIPCAVLMGANIASEVAEE-KFCETXIGLSGRNAGSVNAG 702
+ +S II + L + P VL G + A E+ + I + A V A
Sbjct: 219 ---NTLRTMSQIIPQALGNPRQPFIVLSGPSFAIELMNKLPTGRNLIVIKLYMAAMVVAS 275
Query: 703 YHTDRLLQGRGWWTMKNP------------FKIFGTVKNIVAVGAGFVDGL 819
D+ L + +P +I G +KN++A+ AG V+G+
Sbjct: 276 --KDKKLAAAVQQLLASPNLRISTSNDVTGVEIAGALKNVLAIAAGIVEGM 324
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 133 DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAAS 246
DC +L MAD ++G W S +A+ VG A S
Sbjct: 152 DCTVLTMADDSTIKAKVVIGCDGWNSVVARYVGLGAPS 189
>12_01_0515 +
4081373-4081622,4081725-4081867,4082061-4082219,
4082339-4082518,4082616-4082845,4082959-4083099,
4083366-4083420
Length = 385
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 572 IICDIRSMPPPSAISNPLIKDRAAAVGFIFPSKV 471
++ ++ +PPP + P++ +RA G +FP V
Sbjct: 67 VVALLKPLPPPKTVRYPVLFERAWGFGRLFPCDV 100
>06_03_0298 - 19272257-19273714
Length = 485
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 169 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTM---WVYE 288
K KVC+VG G G A A+ + R +S E R + W+Y+
Sbjct: 2 KKKVCVVGGGLVGLAAARELQREGHDVSVLEQRGGVGGQWLYD 44
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 214 IAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVK 348
++K++G ++ ED + + YEE+ + KKL I+ ET N++
Sbjct: 366 LSKMIGAVQTLVAQCED-LKLKYYEEMAKRKKLHNIVEETKGNIR 409
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 547 GIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETXIGLSGRNAGSVNAG 702
GI LI H + R L+ V++ + + FC L G N G + AG
Sbjct: 1605 GIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRIYAG 1656
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 148 DMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFE---DRVTMWVYEE 291
D+ + KVC++G+G G A A+ + R +++ E D W+Y++
Sbjct: 7 DVGKPRASRKVCVIGAGMAGLAAARELRREGHAVTVLEQAGDVGGQWLYDD 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,435,012
Number of Sequences: 37544
Number of extensions: 467447
Number of successful extensions: 1168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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