Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_F04
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 224 7e-59
07_01_0578 + 4295386-4296489,4297394-4297507 224 9e-59
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.18
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.23
08_02_1278 - 25838146-25839411 32 0.54
03_05_0366 - 23505755-23506441 31 1.2
08_02_1285 - 25881091-25881798 29 3.8
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 29 5.0
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 6.7
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.7
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.7
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 224 bits (548), Expect = 7e-59
Identities = 115/237 (48%), Positives = 141/237 (59%), Gaps = 2/237 (0%)
Frame = +2
Query: 182 EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 361
E A +P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGR
Sbjct: 15 EGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGR 74
Query: 362 AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXX 541
AV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 75 AVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAAT 134
Query: 542 XXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRA 721
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RA
Sbjct: 135 AVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRA 194
Query: 722 GKGKMRNRRRIXVRGP--S*XSXRXRVXRALXKIPGWGPVILKTXPX*XWXPXGHFG 886
GKGKMRNRR I +GP + +V +A +PG ++ P GH G
Sbjct: 195 GKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLG 251
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 224 bits (547), Expect = 9e-59
Identities = 113/233 (48%), Positives = 142/233 (60%), Gaps = 2/233 (0%)
Frame = +2
Query: 194 TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVAR 373
T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+R
Sbjct: 20 TDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSR 79
Query: 374 IPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXX 553
IPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 80 IPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPS 139
Query: 554 XXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGK 733
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D K S +R GKGK
Sbjct: 140 LVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGK 199
Query: 734 MRNRRRIXVRGP--S*XSXRXRVXRALXKIPGWGPVILKTXPX*XWXPXGHFG 886
MRNRR I +GP + ++ +A +PG ++ P GH G
Sbjct: 200 MRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLG 252
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 338 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 448
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.23
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 444 PPRHMLPKAP*PDLWVPPP 388
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.54
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -2
Query: 667 APQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSL 560
A +E LF L+D+LD V+ +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 224 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 400
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 401 HRSGQGA 421
+ + + A
Sbjct: 168 NDNDEEA 174
>08_02_1285 - 25881091-25881798
Length = 235
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 184 EERDGAGCSQAPPVRVQGAHTSGPG 258
EE DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 148 SVARPLXVGVFREERDGAGCSQAPPVRVQGAHT 246
++ARP+ G FREERD G + P ++ GA T
Sbjct: 33 ALARPISTG-FREERDTFGPIRVPNDKLWGAQT 64
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = -2
Query: 661 QEDDS--LFGLVDLLDFVSYNQGKLGNLFNNVSSSLNERWDAGSSNGCCQGR--SPLPEV 494
+EDD L G ++ F + + N+ +S L+ +WDAGS + SPL V
Sbjct: 75 KEDDKYVLHGWQKVMSFQARDSSN-SKAGNDSTSKLSFKWDAGSCSSASSSAMYSPLSAV 133
Query: 493 DATVPAP 473
A AP
Sbjct: 134 SAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 260 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 430
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 431 MCRGGRMFAPTKPWRRW 481
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 323 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 427
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,258,958
Number of Sequences: 37544
Number of extensions: 526584
Number of successful extensions: 1750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1748
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -