Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F04
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   234   7e-62
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    31   0.85 
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    31   0.85 
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  234 bits (572), Expect = 7e-62
 Identities = 121/240 (50%), Positives = 149/240 (62%), Gaps = 1/240 (0%)
 Frame = +2

Query: 170 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 349
           +VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESW
Sbjct: 8   TVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESW 66

Query: 350 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 529
           GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH               
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126

Query: 530 XXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ 709
                     QARGH+I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSK 186

Query: 710 RLRAGKGKMRNRRRIXVRGPS*XSXR-XRVXRALXKIPGWGPVILKTXPX*XWXPXGHFG 886
           R RAGKGK+RNR+     GP     +     RA   IPG   + ++        P GH G
Sbjct: 187 RNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLG 246


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
            protein R148.3a protein.
          Length = 1115

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -2

Query: 664  PQEDDSLFGLVDLLDFVSYNQ--GKLGNLFNNVSSSLNERWDAGSSNGCCQGRSPLPEVD 491
            P   DS F       F+  N+   + G+L +N   S N  + +G SNG   GRSP PE+ 
Sbjct: 1039 PGSSDSSFMSTSQPQFLPLNRQHSRSGHLMSN---SANGPYSSGGSNG---GRSPPPEMP 1092

Query: 490  --ATVPAPPGLR 461
              + +P PPG R
Sbjct: 1093 LLSAIP-PPGAR 1103


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
            protein R148.3b protein.
          Length = 1130

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -2

Query: 664  PQEDDSLFGLVDLLDFVSYNQ--GKLGNLFNNVSSSLNERWDAGSSNGCCQGRSPLPEVD 491
            P   DS F       F+  N+   + G+L +N   S N  + +G SNG   GRSP PE+ 
Sbjct: 1051 PGSSDSSFMSTSQPQFLPLNRQHSRSGHLMSN---SANGPYSSGGSNG---GRSPPPEMP 1104

Query: 490  --ATVPAPPGLR 461
              + +P PPG R
Sbjct: 1105 LLSAIP-PPGAR 1115


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +2

Query: 287 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 457
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 458 PTKP 469
             KP
Sbjct: 197 APKP 200


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 352 YRTCCRPNSSCPWWWYP*VRSGC--LR*HVSWWTYVRPH 462
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,798,478
Number of Sequences: 27780
Number of extensions: 382550
Number of successful extensions: 1010
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)