Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F03
         (1099 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    36   0.008
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.053
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.50 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   0.54 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    24   1.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   2.7  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   4.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   6.1  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   8.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 532 PPPPPXXXXPP--PPPXPPPVXXKKK 461
           PPPPP    PP  PPP PPP   KK+
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 27.1 bits (57), Expect(2) = 0.24
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 779 PPPPPPXXXFXXXXPPPXXGXGF 711
           PPPPPP        PPP    G+
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGY 32



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 926 PPPPPPPP 903
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 22.6 bits (46), Expect(2) = 0.24
 Identities = 9/14 (64%), Positives = 9/14 (64%), Gaps = 2/14 (14%)
 Frame = -3

Query: 926 PP--PPPPPPXXXF 891
           PP  PPPPPP   F
Sbjct: 5   PPGNPPPPPPPPGF 18


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.053
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -1

Query: 532 PPPPPXXXXPPPPPXPPPV 476
           PPP P    PPPPP PP V
Sbjct: 752 PPPAPIMGGPPPPPPPPGV 770



 Score = 33.5 bits (73), Expect = 0.053
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -1

Query: 532 PPPPPXXXX--PPPPPXPPP 479
           PPPPP      PPPPP PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 31.5 bits (68), Expect = 0.22
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 541 KKXPPPPPXXXXPPPPPXPPPV 476
           K  PPPPP    P P P P PV
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPV 751



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 532 PPPPPXXXXPPPPPXPPP 479
           P PPP      PPP PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 926 PPPPPPPP 903
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 926 PPPPPPPP 903
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 926 PPPPPPPP 903
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 779 PPPPPPXXXFXXXXPPP 729
           PPPPPP        PPP
Sbjct: 761 PPPPPPPPGVAGAGPPP 777


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 530  PPPPPXKXXPPPPXPP 483
            PPPPP    PPP  PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722



 Score = 29.9 bits (64), Expect = 0.66
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 529  PPPPXXXXPPPPPXPP 482
            PPPP    PPPP  PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 532  PPPPPXXXXPPPPPXPPPV 476
            P PPP     PPPP  PP+
Sbjct: 1705 PTPPPPPMSVPPPPSAPPM 1723


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect(2) = 0.54
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 505 PPPPPXPPPV 476
           PPPPP PPP+
Sbjct: 945 PPPPPPPPPL 954



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 926 PPPPPPPP 903
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 926 PPPPPPPP 903
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953



 Score = 21.8 bits (44), Expect(2) = 0.54
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 520 PXXXXPPPPPXP 485
           P    PPPPP P
Sbjct: 942 PAFPPPPPPPPP 953


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.2 bits (50), Expect(2) = 1.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 505 PPPPPXPPPV 476
           PPPPP P P+
Sbjct: 357 PPPPPMPAPI 366



 Score = 23.0 bits (47), Expect(2) = 1.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -1

Query: 550 FXXKKXPPPPPXXXXPPPPPXPPP 479
           F   +  P P      PPPP P P
Sbjct: 340 FAGNQVMPTPQVQGSRPPPPPPMP 363


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/55 (27%), Positives = 15/55 (27%)
 Frame = -3

Query: 926 PPPPPPPPXXXFXXXXXXXXXXXXXXXXXXXXXXXXKKXKKXXXXXXXXPPPPPP 762
           PPPPPPPP                                K        PPPPPP
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 520 PXXXXPPPPPXPPP 479
           P    PPPPP PPP
Sbjct: 184 PSDYNPPPPPPPPP 197



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 926 PPPPPPPP 903
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 532 PPPPPXXXXPPPPPXPPP 479
           PP PP    PPP P P P
Sbjct: 467 PPLPPAAPAPPPAPAPAP 484


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 926 PPPPPPPPXXXF 891
           PPPPPPPP   F
Sbjct: 307 PPPPPPPPSNDF 318



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 926 PPPPPPPP 903
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 505 PPPPPXPPP 479
           PPPPP PPP
Sbjct: 306 PPPPPPPPP 314


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 526 PPPXXXXPPPPPXPPPVXXKKKF 458
           PPP    PP PP P  +   +KF
Sbjct: 806 PPPAPLPPPAPPLPTAMSSLQKF 828


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 941  KKXXXPPPPPPPP 903
            K    PPPPPPPP
Sbjct: 1090 KPSAVPPPPPPPP 1102



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 502  PPPPXPPPVXXKKK 461
            PPPP PPP   +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 926 PPPPPPPP 903
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 529 PPPPXXXXPPPPPXPPP 479
           PPPP      PP  PPP
Sbjct: 48  PPPPSVDHSAPPSGPPP 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,652
Number of Sequences: 5004
Number of extensions: 29402
Number of successful extensions: 571
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 579724962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)