Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_F02
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.71 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.93 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -1

Query: 644 PPPXXXFFFXXGGXXPPPPP--XXXXXPPPPP 555
           PPP        GG  PPPPP       PPPPP
Sbjct: 752 PPPAPIM----GGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 598 GXXPPXKKKKXXXGGGXXPPPPPP 669
           G  PP        G G  PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 595 GGXXPPXKKKKXXXGGGXXPPPPPP 669
           GG  PP         G   PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 656 GGXXPPPXXXFFFXXGGXXPPPPP 585
           GG  PPP        G   PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = -1

Query: 665 GGGGGXXPPPXXXFFFXXGGXXPPPPPXXXXXPPPPP 555
           G      PPP         G  P PP      PPPPP
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = -1

Query: 611 GGXXPPPPPXXXXXP--PPPP 555
           G   PPPPP     P  PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPP 27



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 405 PPPLXXGGXXPPXXXXXPPPP 467
           PPP    G  PP     PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 550 KXGGGGGXXXXXGGGGGXXPPXKKKKXXXGGGXXPPPP 663
           + GG  G      GGGG  P  ++     GG     PP
Sbjct: 164 RGGGMPGGFANMFGGGGAGPHARRSHPSFGGSRPSQPP 201



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +1

Query: 556 GGG--GGXXXXXGGGGGXXPPXKKKKXXXGGGXXPPPPP 666
           GGG  GG     GGGG    P  ++     GG  P  PP
Sbjct: 165 GGGMPGGFANMFGGGGAG--PHARRSHPSFGGSRPSQPP 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,459
Number of Sequences: 5004
Number of extensions: 27390
Number of successful extensions: 210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)