Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E19
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    36   0.010
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    29   1.2  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    28   1.6  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    28   2.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   2.1  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    27   2.7  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    27   3.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.6  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    27   4.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.3  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   6.3  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    26   8.4  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   8.4  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   8.4  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 25/97 (25%), Positives = 47/97 (48%)
 Frame = +3

Query: 438  NSNVDDKQKADNLNGNTNEESGSIDSLEANVSGSHIVNINDLEIENGSTHDLADLNKDNI 617
            NSNV++ +K  +   +  ++   I  + + V  +   ++ND EIEN  T  +   + DNI
Sbjct: 742  NSNVEEAEK--DYQPSEKDDKSLIGGILSTVEMTQSTDVND-EIENTLTIPVEVEHSDNI 798

Query: 618  DRVSDTGDSAMDVVEIMDTVLDDMQTNVHDSVKXVTD 728
            D+ S+  D   + V+  +   +D+  +V       TD
Sbjct: 799  DKGSEENDLGKEAVDEANNNQNDVLESVVVEQSTTTD 835


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
 Frame = +3

Query: 399 KTEENPFLIEDVTNSNVDDKQKAD------NLNGNT----NEESGSIDSLEANVSGSHIV 548
           +  +N  LIE  T+ + DDK   D       L   T     + S S DS++++   S  V
Sbjct: 76  EVSQNSKLIEGFTSPSTDDKPNNDVEVDYQELLRQTLEADEDASDSDDSVDSSNKNSE-V 134

Query: 549 NINDLEIENGSTHDLADLNKDNIDRVSDTGDSAMDVVEIMDTV 677
           +I   + E+ S   +   N ++ D  SD+ D    ++  ++ +
Sbjct: 135 SIKRRKTESNSQESVDSSNSESSDEESDSEDETQQLLRELENI 177


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 471 NLNGNTNEESGSIDSLEANVSGSHIV 548
           N N  T EES SIDSL AN+  + +V
Sbjct: 347 NANALTPEESSSIDSLFANLQAAGLV 372


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 366 LPPLQKIPAMNKTEENPFLIEDVTNSNVDDKQKADN 473
           LPPLQ+   + K + NPFL +     N +D   +D+
Sbjct: 62  LPPLQRNNTIRKRKRNPFLADRPYCINSEDMPLSDD 97


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +3

Query: 429  DVTNSNVDD-KQKADNLNGNTNEESGSIDSLEANVSGSHIVNINDLEIENGSTHDLADLN 605
            D+  + VDD K+K+D L   TNE++  I SLE + S +  +    +E  +   + L+D+ 
Sbjct: 1130 DLCANFVDDLKEKSDALEQLTNEKNELIVSLEQSNSNNEAL----VEERSDLANRLSDMK 1185

Query: 606  KDNIDRVSDTGDSAMDVVEIMD 671
            K   D  +       D+V + D
Sbjct: 1186 KSLSDSDNVISVIRSDLVRVND 1207


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = +3

Query: 360 TELPPLQKIPAMNKTEENPFLIEDVTNSNVDDKQKADNLNGNTNEESGSIDSLEANVSGS 539
           T   P   +P+ N T E+    + ++ S+      + + N +T+++   +DS   ++   
Sbjct: 342 TSSHPSTAVPSENDTTESEN--DTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVND 399

Query: 540 HIVNINDLEIENGST 584
           ++   +D E ENG +
Sbjct: 400 NVSAKHDKESENGKS 414


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +3

Query: 384 IPAMNKTEENPFLIEDVTNSNVDDKQKADNLNGNTNEESGSIDSLEANVSGSHIVNINDL 563
           +PA     E P  + D    N D   K DN++    +ES         + GS +  ++D+
Sbjct: 1   MPASTSIPETPSKLPDALLVNSDPASKVDNVSVKIEQES------PLALEGSPLPTVSDV 54

Query: 564 EIENGSTHD 590
             E  + H+
Sbjct: 55  LPETNNAHE 63


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +3

Query: 303  DFTNNDFNIINEATRQITLTELPPLQKIPAMNKTEENPFLIE 428
            +F+NN+ +  +E  R   L ++PPLQ++ +   ++EN  ++E
Sbjct: 1832 EFSNNEDD--SELERLSKLIKVPPLQELYSQMSSDENNQILE 1871


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 538 DPLTLASNESIDPDSSFVFPFKLSAFCLSSTLEFVTSSIKNGFSSVLF 395
           D + L  +E   P S+F  P      C  S+L+   S +K+G+ +V+F
Sbjct: 62  DEINLEIDEESQPISNF--PVLQYILCDKSSLQEKQSRLKSGYKTVIF 107


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 378 QKIPAMNKTEENPFLIEDVTNSNVDDKQKADNLNGNTNEESGSIDSLEANVS 533
           Q+ PA      NPF  E+  + ++D +Q +   + N N+ S +++  EA+VS
Sbjct: 487 QRCPAT--PTRNPFAFENTVSIHMDGRQPSPIKSRNNNQMSFAMEE-EADVS 535


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = +3

Query: 426 EDVTNSNVDDKQKADNLNGNTNEESGSIDSLEANVSGSHIVNINDLEIENGSTHDLADLN 605
           ED+  ++     K+DNL+  + ++S   D  E+ +S  +    +D +I N S   L +L+
Sbjct: 161 EDLIQNSATSHSKSDNLDSESADDSDLAD--ESELSKKY---TSDRKIRNASKKALLELH 215

Query: 606 KDNIDRVSDT 635
           ++      +T
Sbjct: 216 RNTARLTRET 225


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 532 LTLASNESIDPDSSFVFPFKL 470
           L   SN++IDP  SFV P K+
Sbjct: 62  LKFHSNKAIDPSKSFVPPIKM 82


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 420 LIEDVTNSNVDDKQKADNLNGNTNEE---SGSIDSLEANVSGSHIVNINDLEIENGSTH 587
           ++ED     +   Q++  L  N  +    +G  DS EAN+ GSH   +    I  G+T+
Sbjct: 211 MVEDYNVYGLSGSQQSFRLGNNLTKTFWATGYSDSPEANMYGSHPFYMEQRYIPIGTTN 269


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 432 VTNSNVDDKQKADNLNGNTNEESGSI--DSLEANVSGSHIVNINDLEIENGSTHDLADLN 605
           +T   + D  K D  +G  + ++  +  D +      SH+ NI   E +      L +  
Sbjct: 498 LTYRKLPDSWKQDKCSGRDDLDNSVLNDDYISVAPKPSHVKNIMHHENQYLQALQLVEDE 557

Query: 606 KDNIDRVSDTGDSAMDVV 659
           + + DRV +T +SA+ ++
Sbjct: 558 RYDYDRVLNTTESAIKIL 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,672
Number of Sequences: 5004
Number of extensions: 69551
Number of successful extensions: 244
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)