Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E19
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 438 NSNVDDKQKADNLNGNTNEESGSIDSLEANVSGSHIVNINDLEIENGSTH 587
           N+N +     +N N N N  +G+ D+   N   S+  N  D+    G  H
Sbjct: 232 NANTNASNNNNNNNNNNNNNNGANDNGNGN-GASNNNNNGDMFCHTGLGH 280


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 221  RHEWAHRRQCGVWGLPHSTYGHQRLERGLHEQRFQHY*RS-HQTNNSHRITALTENTS 391
            R E +  R    +G+PHST  ++  ER L   R +   +S  +T  +  +TA    T+
Sbjct: 1057 RGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKRDQKQSDDKTKETSTVTAAAAATN 1114


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 189  VPNQYTPKRVTAMNGHIV 242
            VP    P R+T+  GH+V
Sbjct: 1307 VPTNRVPARITSFGGHVV 1324


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 189  VPNQYTPKRVTAMNGHIV 242
            VP    P R+T+  GH+V
Sbjct: 1303 VPTNRVPARITSFGGHVV 1320


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 450 DDKQKADNLNGNTNEES-GSIDSLEANV 530
           D K+K D  NG T EE+  SI S +A +
Sbjct: 374 DIKEKCDRRNGKTTEENPKSIKSGDAAI 401


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -2

Query: 630 RKH-DQCCLCL 601
           R+H D CCLCL
Sbjct: 349 RRHSDSCCLCL 359


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 15/68 (22%), Positives = 30/68 (44%)
 Frame = +3

Query: 312 NNDFNIINEATRQITLTELPPLQKIPAMNKTEENPFLIEDVTNSNVDDKQKADNLNGNTN 491
           N+DFN  +   R +       ++    +N  + +   I++  N N D+ QK +  N N  
Sbjct: 388 NDDFNFDDVNFRILGANVKELIRNTHCVNNNQNDN--IQNTNNQN-DNNQKNNKKNANNQ 444

Query: 492 EESGSIDS 515
           + +   D+
Sbjct: 445 KNNNQNDN 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,907
Number of Sequences: 438
Number of extensions: 5098
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)