Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E18
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.063
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.29 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect(2) = 0.063
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 594 PPXPPPPXPPP 626
           PP P PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 515 PPPPPPPPXPXXXXG 471
           PP P PPP P    G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 795 GXXXXXPXPPPPPAPP 842
           G     P P PPP PP
Sbjct: 333 GDSDTPPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect(2) = 0.063
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 447 TPPPPPPPXP 476
           TPP P PP P
Sbjct: 337 TPPKPAPPPP 346


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 515  PPPPPPPP 492
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 450  PPPPPPP 470
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect(2) = 0.34
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 450  PPPPPPP 470
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 509  PPPPPPXP 486
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 452  PPPPPPXP 475
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 603  PPPPXPPP 626
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 819  PPPPPAPP 842
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.0 bits (42), Expect(2) = 2.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 813  PXPPPPPA 836
            P PPPPP+
Sbjct: 1356 PPPPPPPS 1363



 Score = 20.6 bits (41), Expect(2) = 2.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 753  PPPPPXP 773
            PPPPP P
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 0.34
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 543  PPPPPXAGG 569
            PPPPP + G
Sbjct: 1357 PPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 515  PPPPPPPP 492
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 543 PPPPPXAGG 569
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,911
Number of Sequences: 438
Number of extensions: 9416
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)