Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E15
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29560-7|CAA82659.1|   88|Caenorhabditis elegans Hypothetical pr...    36   0.039
U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z81491-17|CAO82030.1|  959|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z81092-2|CAB03145.3|  959|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical ...    29   3.4  
AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF003130-18|AAO38640.1|  441|Caenorhabditis elegans Prion-like-(...    29   4.5  
AF003130-17|AAB54127.1|  470|Caenorhabditis elegans Prion-like-(...    29   4.5  
AF003130-16|AAK68879.1|  457|Caenorhabditis elegans Prion-like-(...    29   4.5  
AF003130-15|AAM45365.1|  465|Caenorhabditis elegans Prion-like-(...    29   4.5  
AC024831-9|AAY86309.1|   74|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AF025461-2|ABC71819.1|  670|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF026205-1|ABD63216.1|  126|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z29560-7|CAA82659.1|   88|Caenorhabditis elegans Hypothetical
           protein K03H1.7 protein.
          Length = 88

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 462 DPRSPTQDFERTPIIISSKINDLTNDTEN 548
           DPRSP+QD ERTPI + +  ND    +E+
Sbjct: 30  DPRSPSQDIERTPIQVKTVENDENGSSES 58



 Score = 33.1 bits (72), Expect = 0.28
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
 Frame = +3

Query: 213 SNSSKPTDTSLVLKTELELGNSDPRSPTPEITRTPLQGK------NGAKHNITKNIDL-R 371
           S ++K T +S   K+      SDPRSP+ +I RTP+Q K      NG+  + T   D  R
Sbjct: 8   SFNAKQTSSSTPQKSTKTPTCSDPRSPSQDIERTPIQVKTVENDENGSSESSTTKADKPR 67

Query: 372 KT 377
           KT
Sbjct: 68  KT 69


>U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical
           protein T12A2.5 protein.
          Length = 994

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
 Frame = +3

Query: 189 DYINNKMGSNSSKPTDTSLVLKTELELGNSDPRSPTPEITRTPLQGKNGAKHNITKNI-- 362
           D INN + S  S P D   +L T L L   + ++     T    Q   GAK  +TKN+  
Sbjct: 567 DTINNIILSQKSIPDDVFQLLITTLRLTRRELKNGDSSFTELNSQ-LEGAKTELTKNLFT 625

Query: 363 ----DLRKTFESTNGDEKLIHNNPILSAVIKNHLQSYDPRS 473
                LR   E+T+  +  I     L    +N L   + RS
Sbjct: 626 AVKKALRNATETTDDQDSFIQRISELKLSTENDLDDLNARS 666


>Z81491-17|CAO82030.1|  959|Caenorhabditis elegans Hypothetical
           protein F58D12.3 protein.
          Length = 959

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/81 (27%), Positives = 43/81 (53%)
 Frame = +3

Query: 384 STNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPIIISSKINDLTNDTENLRLIS 563
           S NG+   + +   ++  +KN+  S    SP    + TP   +SKIND+T+ ++ L  +S
Sbjct: 388 SPNGESMFVWSKFPVNKQVKNYRPS-GKSSPFLCSKTTP---NSKINDVTSLSDILNSVS 443

Query: 564 DSCTSPITSKDKDNSCETYME 626
           ++  S + +  +DN+   + E
Sbjct: 444 ETPISLLNTLYRDNAYPRFPE 464


>Z81092-2|CAB03145.3|  959|Caenorhabditis elegans Hypothetical
           protein F58D12.3 protein.
          Length = 959

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/81 (27%), Positives = 43/81 (53%)
 Frame = +3

Query: 384 STNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPIIISSKINDLTNDTENLRLIS 563
           S NG+   + +   ++  +KN+  S    SP    + TP   +SKIND+T+ ++ L  +S
Sbjct: 388 SPNGESMFVWSKFPVNKQVKNYRPS-GKSSPFLCSKTTP---NSKINDVTSLSDILNSVS 443

Query: 564 DSCTSPITSKDKDNSCETYME 626
           ++  S + +  +DN+   + E
Sbjct: 444 ETPISLLNTLYRDNAYPRFPE 464


>AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6b protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 198 NNKMGSNSSKPTDTSLVLKTEL----ELGNSDPRSPTPE 302
           NN   +NS+  T T L +KTE     E    DPRSP P+
Sbjct: 68  NNNNNNNSNSTTTTPLEIKTERNQQHEHTTIDPRSPPPK 106


>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 198 NNKMGSNSSKPTDTSLVLKTEL----ELGNSDPRSPTPE 302
           NN   +NS+  T T L +KTE     E    DPRSP P+
Sbjct: 68  NNNNNNNSNSTTTTPLEIKTERNQQHEHTTIDPRSPPPK 106


>AF003130-18|AAO38640.1|  441|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform d protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 612 ETYMEAKEFS--PDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKS 773
           E YM ++ F   PDLIS +N    +LDS F  +         SS+ S    EA+ S
Sbjct: 299 ERYMCSRFFIDFPDLISQENKLRNYLDSHFGTSFNGATYDQWSSSGSDTDSEASTS 354


>AF003130-17|AAB54127.1|  470|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform a protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 612 ETYMEAKEFS--PDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKS 773
           E YM ++ F   PDLIS +N    +LDS F  +         SS+ S    EA+ S
Sbjct: 328 ERYMCSRFFIDFPDLISQENKLRNYLDSHFGTSFNGATYDQWSSSGSDTDSEASTS 383


>AF003130-16|AAK68879.1|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform b protein.
          Length = 457

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 612 ETYMEAKEFS--PDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKS 773
           E YM ++ F   PDLIS +N    +LDS F  +         SS+ S    EA+ S
Sbjct: 315 ERYMCSRFFIDFPDLISQENKLRNYLDSHFGTSFNGATYDQWSSSGSDTDSEASTS 370


>AF003130-15|AAM45365.1|  465|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform c protein.
          Length = 465

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 612 ETYMEAKEFS--PDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKS 773
           E YM ++ F   PDLIS +N    +LDS F  +         SS+ S    EA+ S
Sbjct: 323 ERYMCSRFFIDFPDLISQENKLRNYLDSHFGTSFNGATYDQWSSSGSDTDSEASTS 378


>AC024831-9|AAY86309.1|   74|Caenorhabditis elegans Hypothetical
           protein Y55F3C.4 protein.
          Length = 74

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 312 TPLQGKNGAKHNITKNIDLRKTFESTNGDEKLIHNNPILSAVIKNHLQSYDPRSP 476
           TPL G NG        + +  T      D  +++  PI S V    L +Y  RSP
Sbjct: 10  TPLDGSNGTSSRRNPFVQVTSTDSCHLPDRPVLNTPPISSRVRGEKLVNYMERSP 64


>Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical
           protein ZK337.2 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 703 VSLKVESKNPLHKFFGEIK 647
           +S+ + +K PLHKF GEIK
Sbjct: 210 ISVPIYAKKPLHKFGGEIK 228


>AF025461-2|ABC71819.1|  670|Caenorhabditis elegans Hypothetical
           protein M01D1.2b protein.
          Length = 670

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 438 IKNHLQSYDPRSPTQDFERTPIIISSKIND-LTNDTENLRLISD-SCTSPITSKDKDNSC 611
           +KN L+S   +    D  ++P I    +N  L + TE   LI+   C   +TSK K ++ 
Sbjct: 556 VKNALKS--KQQLKNDTLKSPAITDENVNTKLRSATEQEDLITIYQCEEFLTSKSKKSTS 613

Query: 612 ETYMEAKEFSPDLISPKNLC 671
           E    A EF+ D +  KN C
Sbjct: 614 EMLRIAMEFNLDNL--KNHC 631


>AF026205-1|ABD63216.1|  126|Caenorhabditis elegans Hypothetical
           protein T23E7.5 protein.
          Length = 126

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 151 SIITQVISEALYWTILIIKWEVIQVNQPTPLWY*KLN*NLVTRTLDL 291
           S+IT VI  AL+   L + W +   ++PTP+   K +  L+ R + L
Sbjct: 36  SVITYVIIAALFLATLFL-WPIKSADEPTPIEQQKTDIVLIPRVVYL 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,415
Number of Sequences: 27780
Number of extensions: 372144
Number of successful extensions: 1140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)