Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E15
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.54 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   2.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.8  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 519 INDLTNDTENLRLISDSCTSPITSKDKDNSCETYMEAKEFS 641
           I  LT DT+  RL +    S +   +KD+     +  KEFS
Sbjct: 239 IKKLTEDTQERRLSNKGSISKLQFHNKDDDLILTLGKKEFS 279


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
 Frame = +3

Query: 360 IDLRKTFESTNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFER-TPIIISSKINDLTN 536
           +D R    S +    L+ + P       N  +S +     QD E+   + I S  +   N
Sbjct: 33  VDRRSPSSSRSPSPSLLTSQPHQD---HNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVN 89

Query: 537 DTENLRLISDSCTSPI---TSKDKDNSCETYMEAKEFSPDLISPKNLCNGFLDS 689
           D +    I D   + +    +K+K N C  + E K     L   K L N  +DS
Sbjct: 90  DKKEENFIVDRLRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDS 143


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 736 QLPPKKPWKP 765
           +LPP K WKP
Sbjct: 102 RLPPDKVWKP 111


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 736 QLPPKKPWKPTSLM 777
           ++PP + WKP  LM
Sbjct: 99  RIPPHRLWKPDVLM 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,479
Number of Sequences: 438
Number of extensions: 4861
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)