Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E14
         (981 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   9.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 19/67 (28%), Positives = 22/67 (32%)
 Frame = +2

Query: 713 PXPKXXPPXXX*IXXTXRXPQILPNSLGESXGXXVPXPGPPVXSPXPXXXPXXXPXPQXN 892
           P P   PP           P  LP  +G      +P P  P+  P P   P   P P   
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPS-LP--MGAPAAPPLP-PSAPIAPPLPAGMPAAPPLPPAA 473

Query: 893 PGPXXPP 913
           P P   P
Sbjct: 474 PAPPPAP 480


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 19/75 (25%), Positives = 22/75 (29%), Gaps = 3/75 (4%)
 Frame = +2

Query: 713  PXPKXXPPXXX*IXXTXRXPQILPNSLGESXGXXVPXPGPPVXSP---XPXXXPXXXPXP 883
            P P   PP           P  +P    E      P   PPV +P    P   P     P
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103

Query: 884  QXNPGPXXPPXXSKS 928
               P    PP  + S
Sbjct: 1104 VPKPSVAVPPVPAPS 1118


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/53 (26%), Positives = 17/53 (32%)
 Frame = +2

Query: 770  PQILPNSLGESXGXXVPXPGPPVXSPXPXXXPXXXPXPQXNPGPXXPPXXSKS 928
            P + P S           P PP+  P P   P     P   P P  P   + S
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 155 WRCSKQAIASSATNVTVNRIRTA 223
           W+C K  + +S+TNV ++ +R A
Sbjct: 176 WKCIKSNLNTSSTNVLLSALRCA 198


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = +3

Query: 828 VPPXXPPPPXXX-PXXXRXXXXTRDHXXPPRXPKVPXPP 941
           +P   PPP     P        +     PP  PKVP PP
Sbjct: 167 IPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 818 PXPGPPVXSPXPXXXPXXXPXPQXNPGPXXPP 913
           P P P V  P P   P   P P    G   PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,878
Number of Sequences: 5004
Number of extensions: 39038
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)