Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_E13
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 30 0.38
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 28 2.0
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 2.7
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 27 2.7
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 3.6
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 4.7
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 27 4.7
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 6.2
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 8.2
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 30.3 bits (65), Expect = 0.38
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Frame = +2
Query: 386 EDPDEYCLGAMYKNGTDSSSGIISIALVCFEPSLKANDIETSGILTLISVVF-------- 541
E+ D Y L ++ +S G++ I ++C L N + I++ +S F
Sbjct: 32 ENTDTYALTPLFYWIRSTSVGLLLITIIC-HLFLLLNIFISIPIISHLSPGFMPVGFTAL 90
Query: 542 ---LLATFAVYTYFPNL--RDLQGLCYMSMSISMALGFLSLGVLQLNTGFRQDLCTLTGF 706
LLA ++ Y PN R Q + ++I + + FLS +L+ G+R + L F
Sbjct: 91 AAILLAMQIMFVYSPNAPERVTQRIICFLLAIDVLVVFLS-PILRHREGWRSNAFVLWAF 149
Query: 707 VVYTWMIAT 733
++ W++ T
Sbjct: 150 LMSLWIVIT 158
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 607 HVYEHKYGAWILVIGSTATEYRV----PSRFMYIDRIRRVHLDD 726
H+Y H YG L G TAT YRV +F+ +++RRV + D
Sbjct: 68 HIY-HVYGLHGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLIRD 110
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 366 LQILFSPKILMSIVSVPCTKTVQTLVRELSPLR-LYASN 479
LQ+ SP +L V+ PC K++ ++REL + Y SN
Sbjct: 178 LQVYTSPNLLR--VNAPCRKSLSEMLRELKDIEDDYGSN 214
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 553 FRCVHIFSKFKRPPRLMLHVYEH 621
+RC F RP L +H Y H
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSH 490
>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 413 AMYKNGT-DSSSGIISIALVCFEPSLKANDI 502
A+YK G + G I I VC +P+L+ N +
Sbjct: 134 ALYKTGLLKNPKGFIHIHFVCVDPALQGNGV 164
>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 100
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 526 NLCSVFISDFRCVHIFSKFKRPPRLMLHVYEH 621
++CS+F+S C H + K PP + H Y H
Sbjct: 3 SVCSIFLS---CSHRVIQAKHPPFPLFHSYFH 31
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 514 NTNI-NLCSVFISDFRCVHIFSKF 582
N NI N+ ++I FRC+HI +F
Sbjct: 93 NENIVNIFDLYIDQFRCLHIVMEF 116
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -2
Query: 573 KYVYTAKVANKNTTEINVSIPLVSMSLALSDGSKHTSAMEIIPELESVP 427
KY + + ++ + IP +S SL L DGS ++ + S+P
Sbjct: 239 KYGFVVIIIVGELNDVELKIPAISHSLKLKDGSILVLRSSLLHQWYSLP 287
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Frame = +3
Query: 33 LKILTHSDTLVQVISS*SYCSV------DLNQVHVAAYRPTLII 146
L ++TH + +++++S +YCS D NQ + + T+I+
Sbjct: 1245 LIVITHDEQFIRLVNSDAYCSYYYRVKRDTNQKSMVRFANTVIV 1288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,747,433
Number of Sequences: 5004
Number of extensions: 82377
Number of successful extensions: 243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -