Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E13
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167...    30   2.8  
12_01_0872 + 8326873-8327475,8328246-8328575                           29   6.5  
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547...    29   6.5  
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248...    29   6.5  
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540...    28   8.6  

>04_04_0396 +
           24915880-24916222,24916318-24916577,24916689-24916784,
           24916889-24917059,24917262-24917975
          Length = 527

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 479 PSLKANDIETSGILTLISVVFLLATFAVYTYFPNLRDLQGLCYMSMSISMALGFLSLGVL 658
           P++ A   +++G       V  L      T+ P   D+Q LC  S S+   LGF   G+L
Sbjct: 135 PAILALTAQSAGAAVADVTVDALVAQNSITHQPLAADMQSLCGFSSSVGALLGFSISGLL 194

Query: 659 QLNTG 673
             + G
Sbjct: 195 VHSMG 199


>12_01_0872 + 8326873-8327475,8328246-8328575
          Length = 310

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +2

Query: 509 SGILTLISVVFLLATFAVYTYFPNLRDLQGLCYMSMSISMALGFLSLGVLQLNT 670
           +G++TL++ + LL + + Y Y P +   +G+ +   S ++ALG L +    L T
Sbjct: 28  AGVVTLVTSILLLLSGSTYGYGPKVCTGRGVFF---SPTIALGLLLMAAFILGT 78


>08_02_0204 -
           14253258-14253383,14253685-14253878,14254029-14254743,
           14254811-14254837,14258779-14258838,14263174-14264844,
           14267402-14267518,14267593-14267763,14270248-14270346,
           14271684-14271770,14272392-14272475,14272929-14273068,
           14274414-14274494,14275492-14275680,14275986-14276022
          Length = 1265

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +2

Query: 242 GVIISPRGKCGTE-PMVSMNCSNGRL-LLKDIILNGNKVSTQDTPDFVFAEDPDEYCLGA 415
           G  + P   CGT   + +    +G + +L D   + NK+    TP FV      E C   
Sbjct: 115 GAYVDPLSDCGTPLHLAATEGQDGTMKILLDHKADYNKMVLGMTPLFVAINHASEKCAKL 174

Query: 416 MYKNGTDSSSGIISIAL 466
           + K G D +   +  AL
Sbjct: 175 LVKAGADINGDYVLTAL 191


>04_04_1320 -
           32623378-32623949,32624035-32624451,32624548-32624895,
           32625671-32625768,32625882-32626051,32627134-32627418,
           32628041-32628119,32628481-32628623,32629227-32629634
          Length = 839

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 677 GTRYSVAVLPMTRIQAPYLCS*TCNISLGGLLNLENMCTQRKSLIKTLQRLML 519
           GTR+S  V   T    P L + + N SL   +  E MC    S++  L +  L
Sbjct: 103 GTRFSTLVPGATSFPQPILTAASFNASLFRAIGEERMCVNIVSMVHALPQQQL 155


>08_02_0580 -
           18953208-18953513,18953668-18953868,18953929-18954009,
           18954096-18954410,18954493-18954636,18954733-18954822,
           18954907-18954983,18955122-18955182,18955264-18955490,
           18955581-18955740,18955825-18956025,18956114-18956209,
           18956380-18956565,18956641-18956810,18957044-18957275,
           18958652-18959029
          Length = 974

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 689 CTLTGFVVYTWMIATFFWMNVICINVCRSVLNASRLAKS 805
           C +T   +Y W+I+TFF   V+ I     + N + + KS
Sbjct: 417 CVITIDDIYKWLISTFFLWFVLAIYFDNIIPNVNGVRKS 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,351,594
Number of Sequences: 37544
Number of extensions: 496742
Number of successful extensions: 1209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)