Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E07
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    28   1.5  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   6.2  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   6.2  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    26   6.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   8.2  

>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 637 LMAKHYYRNLSQWNQMEEFYTNVHVCILGGMLTTVTIIT 753
           L+ +H Y NLSQ   +E+F   +     GG L   + +T
Sbjct: 24  LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQSKLT 62


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 249 AAEPEEF-QDSGEDWTPDADSNEPASRTGRKRVSKAPVN 362
           + + EEF +DS      + D+NEP+++   K V +  VN
Sbjct: 237 STDSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVN 275


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 246 RAAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 383
           + A+ ++  D+    TP ADS EP      K V+ A   +++K  K
Sbjct: 342 KVADEKQLPDASSQATP-ADSKEPRKEEAEKPVTSATEVSSEKVEK 386


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 600 VISKLDELNLWKIDGKALLQKFIPMESN 683
           V S+L EL++WK   K +     P+ESN
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESN 259


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 648 LCHQFSTSSVHQVLILQYL 592
           LCHQ S+S  +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,426,838
Number of Sequences: 5004
Number of extensions: 71365
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)