Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_E07
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853... 30 2.8
04_04_0260 + 23996775-23996865,23997031-23997566,23998407-239988... 30 2.8
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 29 3.7
06_01_0127 - 977667-978719,978875-979051 29 4.9
06_03_0502 + 21493442-21494341 29 6.5
05_03_0038 + 7612866-7613132,7615691-7616608 29 6.5
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 29 6.5
07_01_0230 - 1679165-1681108 28 8.6
05_03_0043 - 7702940-7703077,7703361-7703420,7703562-7703612,770... 28 8.6
>07_01_1006 +
8528508-8529285,8529376-8529544,8530179-8530445,
8530533-8530878,8530964-8531101,8531197-8531322,
8531422-8531634,8531721-8531863,8531891-8532009,
8532099-8532295,8532379-8532729,8532811-8533395
Length = 1143
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 216 KRRRFGWVRDRAAEPEEFQDSGEDWTPDADSNEPASRTGRKRVS-KAPVNNTK 371
K R GW + + + + G DW D D++ P R+ +S K P+++++
Sbjct: 282 KERMEGWKQKQERMQQLRSEGGGDWDGDGDADLPLMDEARQPLSRKVPISSSR 334
>04_04_0260 +
23996775-23996865,23997031-23997566,23998407-23998892,
23998989-23999152,23999220-23999281,23999753-23999907,
24000625-24000738,24001701-24002233,24002512-24002609,
24003108-24003398,24003764-24003830,24003905-24003983
Length = 891
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +3
Query: 240 RDRAAEPEEFQDSGEDWT--PDADSNEPASRTGRKRV-SKAPVNNTKKKRK 383
+D AAE E+ D G+D D ++ E ASRT R V + P + +K+K
Sbjct: 836 KDDAAEDEDGDDDGDDMADKDDKETREIASRTKRLSVEAVGPSSFASRKKK 886
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +3
Query: 255 EPEEFQDSGEDWTPDADSNEPASRTGR 335
E EF D G D PDA S+ P R GR
Sbjct: 636 EKWEFIDEGRDNNPDASSDMPHGRRGR 662
>06_01_0127 - 977667-978719,978875-979051
Length = 409
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 530 CTKAFPFRKFCLAEIRCKMGWRYCN 604
C + P+R+ CLA +C+ G Y N
Sbjct: 130 CARLGPYRRGCLANSQCQFGITYAN 154
>06_03_0502 + 21493442-21494341
Length = 299
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 234 WVR--DRAAEPEEFQDSGEDWTPDADSNE 314
W+R D EPEEF D +D P+ D ++
Sbjct: 217 WLRVADEDPEPEEFDDEADDDEPEMDDDD 245
>05_03_0038 + 7612866-7613132,7615691-7616608
Length = 394
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 240 RDRAAEPEEFQDSGEDWTPDADSNEPASRTGRK 338
RDR++ P DS DW+ D+ +R R+
Sbjct: 15 RDRSSTPSSHDDSDSDWSGGEDAVPQVARVARR 47
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 645 KALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNY 749
K + Q + P E+ R LH C C + D D +
Sbjct: 293 KGMRQMYEPFENLARELHMCPCCQRAFTPDEEDEF 327
>07_01_0230 - 1679165-1681108
Length = 647
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 360 SPVPLIHVFCQYEMQVRSNRRPASN-LHQSPEILL 259
SP+ ++ F + ++V RRP +N H SP IL+
Sbjct: 506 SPLTDVYAFAIFVLEVTCGRRPINNYTHDSPTILV 540
>05_03_0043 -
7702940-7703077,7703361-7703420,7703562-7703612,
7705355-7705408,7707260-7707325,7707552-7707629,
7708568-7708970,7710492-7710493,7711076-7711078
Length = 284
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 737 P*QLLPHNRNTGSQSPPXTP 796
P QLL HN NTG+Q P P
Sbjct: 217 PGQLLNHNGNTGAQQPAAQP 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,089,255
Number of Sequences: 37544
Number of extensions: 426069
Number of successful extensions: 1306
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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