Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E04
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   216   4e-57
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   216   4e-57
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    29   0.91 
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   3.7  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   8.5  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  216 bits (527), Expect = 4e-57
 Identities = 103/219 (47%), Positives = 140/219 (63%)
 Frame = +1

Query: 193 VVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 372
           + Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ 
Sbjct: 37  IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96

Query: 373 AAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTG 552
           AAY+TG                              E +++GP  F+ +LDVGL RT+TG
Sbjct: 97  AAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156

Query: 553 ARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDX 732
           +RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DD 
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDE 216

Query: 733 DSFKRQFSKYIKLGVTAXAIEAIYKKAHEAIRADPSXKK 849
           + +++QFS  I  G+ +  +E IY +A+  IR DPS +K
Sbjct: 217 ERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQK 255



 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = +3

Query: 84  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 191
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRL 36


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  216 bits (527), Expect = 4e-57
 Identities = 103/219 (47%), Positives = 140/219 (63%)
 Frame = +1

Query: 193 VVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 372
           + Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ 
Sbjct: 37  IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96

Query: 373 AAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTG 552
           AAY+TG                              E +++GP  F+ +LDVGL RT+TG
Sbjct: 97  AAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156

Query: 553 ARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDX 732
           +RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DD 
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDE 216

Query: 733 DSFKRQFSKYIKLGVTAXAIEAIYKKAHEAIRADPSXKK 849
           + +++QFS  I  G+ +  +E IY +A+  IR DPS +K
Sbjct: 217 ERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQK 255



 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = +3

Query: 84  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 191
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRL 36


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 11  LPXXYREFLKILVXWTPLCNLDLKYGIR*SCEEQTILQEVPSKIQ 145
           LP  Y EF KIL  + P  N D+KY ++        LQ++   +Q
Sbjct: 184 LPAEYEEFYKILCIYFPK-NYDIKYIMKSVLNNSKGLQDIADDLQ 227


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 415 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 323
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 23/84 (27%), Positives = 33/84 (39%)
 Frame = +1

Query: 652 FNAEVHRAHIFGLHVAEYMRSLEQDDXDSFKRQFSKYIKLGVTAXAIEAIYKKAHEAIRA 831
           FNA   R+    +  A+     EQ     F   F  + + G  A    +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVWDDREQY---FFYEVFPNFNE-GSIAEMKSSIYESSQEGIRS 418

Query: 832 DPSXKKKELRXTRSNXXXGTTQAT 903
                KKE     S     TTQ +
Sbjct: 419 SSENNKKEDDLKDSTGDLNTTQVS 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,544,410
Number of Sequences: 5004
Number of extensions: 72233
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)