Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E04
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   8.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 703 YMRSLEQDDXDSFKRQFSKYIKLGVTAXAIEAIYKKAHEAIRADP 837
           Y+ SL+Q    +++ Q  K I +       +A  KK H AIR +P
Sbjct: 597 YVPSLDQVWILNWRNQ--KDIDVKTVQVIEDAAQKKKHRAIRPEP 639


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 213 FVLVLNNRGVYEHNNQFSLHDAS*ILLGTS 124
           ++L L+NR     NN F+ +D +  +LG +
Sbjct: 380 YMLALSNRMQKIINNDFNFNDVNFRILGAN 409


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 403  VLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQ 305
            V+   +   L   +S    HHNV  H    RTQ
Sbjct: 1661 VISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQ 1693


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,278
Number of Sequences: 438
Number of extensions: 4992
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)