Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_E03
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.93 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 23/113 (20%), Positives = 24/113 (21%), Gaps = 2/113 (1%)
 Frame = +1

Query: 268 PPPXXXFXKKKXXPXPXXXXXXPKKXXXGGPPXKKKXXXPXXKKXXFPXXKXPPPXFSPX 447
           PPP          P P      P        P   +   P            PPP     
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398

Query: 448 XXXXXPPXXXXXXRGXXXFXXXPXPPPXKKKXXPP--PPXFXXGXXGXXXXPP 600
                PP               P  PP      PP  PP    G       PP
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/67 (28%), Positives = 23/67 (34%)
 Frame = +3

Query: 531 KKKXXPPPPPFXXGXXXXXXXPPPXXFXGXXXXPXXPXXXGPPXXGGXGAPPXXXKXFXX 710
           KK+  PPPPP           PP          P  P    PP     G+ P   +    
Sbjct: 308 KKRPPPPPPPSRRNRGK----PPIGNGSSNSSLPPPPP---PPRSNAAGSIPLPPQGRSA 360

Query: 711 XGPPPPK 731
             PPPP+
Sbjct: 361 PPPPPPR 367


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 514 PXPPPXKKKXXPPPPXFXXGXXGXXXXPP 600
           P PPP      PPPP    G  G    PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +3

Query: 462 PPXXPXXXKGXXXXXXXXXXPPXKKKXXPPPPPFXXGXXXXXXXPPP 602
           PP  P               PP      PPPPP   G       PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 23/75 (30%), Positives = 23/75 (30%)
 Frame = -1

Query: 685 GGAPXPPXXGGPXXXGXXGXXXXPKXXXGGGXXXXXXXPXXXGGGGGXXFFFXGGXXXFX 506
           G  P P   GG    G  G         GGG       P   GGG G    F GG   F 
Sbjct: 199 GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG---FGGGLGGF- 254

Query: 505 KXXXXPXXXXGXXGG 461
                P    G  GG
Sbjct: 255 --GGGPGGFGGGPGG 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,406
Number of Sequences: 5004
Number of extensions: 24737
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)