Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_E02
(943 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 151 2e-37
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 56 5e-09
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 29 0.95
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 1.3
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 2.9
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 27 3.8
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 26 6.7
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 26 8.8
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 151 bits (365), Expect = 2e-37
Identities = 75/184 (40%), Positives = 115/184 (62%), Gaps = 12/184 (6%)
Frame = +1
Query: 199 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 378
MPKS+R K ++L +T KKG K + ++ SL ++++++F + NMRNT LK +R+DW
Sbjct: 1 MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60
Query: 379 KDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQ 558
K SR F GK KVMA ALG T +E E ++ L+K L G GLL TN +V+ +F+S+
Sbjct: 61 KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120
Query: 559 ASEYARAGFIATKDVLLPKGPLXD------------FSHTIEPHLRRLGLPTSLEKGVIN 702
+++ARAG +A ++P GP+ +HT+EP +R+LG+PT L+ GV+
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVT 180
Query: 703 LIKD 714
L+ D
Sbjct: 181 LLAD 184
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 56.4 bits (130), Expect = 5e-09
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Frame = +1
Query: 265 KQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDWKDS-RFFFGKNKVMAIALGKTK 441
K + E++R+ KY +F+ I+N+ + ++ +R + + GKN ++ A+
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 442 SDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQASEYARAGFIATKDVLLPKGP 621
+D E L L ++G G + TN D+ +V + + AR IA DV +P G
Sbjct: 68 NDMPE--LERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGN 125
Query: 622 LXDFSHTIEPHLRRLGLPTSLEKGVINLIKDIRFAER 732
+ LG+PT + +G I + D+ +
Sbjct: 126 TG-MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSK 161
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 29.1 bits (62), Expect = 0.95
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = -3
Query: 473 NRFSCSSISSLLV-LPRAIAITLFFPKKNLESFQSFRRSFNFVFLMLLMVNKNMCSYLLS 297
N F+ S+ S LV L ++I+L F + E++Q R + +F +V +C Y L
Sbjct: 13 NIFTHSAPSEKLVGLQNRLSISLRFIEYAFETYQPERLAMSFNGGKDCLVLFLLCIYYLK 72
Query: 296 EFLISSMTFCLCTKPFLLVFVSDTFLSLFDF 204
E L PF+ V D F + DF
Sbjct: 73 EKYKEQAQAKLSNIPFVFVRPRDEFPEMDDF 103
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = -3
Query: 404 FPKKNLESFQSFRRSFNFVFLMLLMVNKNMCSYLLSEFLISSMTFCLCTKPFLLVFVSDT 225
FP+ L S ++ R++ F + + S+ SE L++++ +C K F V
Sbjct: 684 FPR--LASGKTDRKALKIQFSASDKHSTDFSSFNQSELLVANVLHEICEKRFNSVVSISR 741
Query: 224 FLSLFDFGI 198
F S+FD G+
Sbjct: 742 FSSIFDLGL 750
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 491 PFNFFDNRFSCSSISSL--LVLPRAIAITLFFPKKNLESFQSFRRSF 357
P N+FDN ++ +SISS ++LP I+ F P L R+SF
Sbjct: 604 PANYFDNVYTPNSISSFSEVLLPNLISTLNFAP---LSLIPLLRKSF 647
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 524 TSLFVISNPH*PFNFFDNRFSCSSISSL-LVLPRAIAITLF 405
TSL +I+ + P NF D+R C ++S++ L L LF
Sbjct: 9 TSLVIIAFRYLPNNFNDSRLGCDNLSTVGLCLKNGTGEVLF 49
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 502 LLMTNRDVPDVLNWFKSYQASEYARAGFIATKDVLLPKGPLXDFSHTIEPH 654
+L+ VPD++NW ++ A + G A L+ + L S EP+
Sbjct: 345 VLLFKSFVPDIINWREALFAGHFGPIGVGALYTCLVARAELEVHSTVPEPN 395
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 523 VPDVLNWFKSYQASEYARAGFIATKDVLLPKGPLXDFSHTIE 648
+ + L +SY +Y+R+ + T LP+ + F+++IE
Sbjct: 30 ISNYLKPVRSYPYIKYSRSSLLLTASTTLPENFVISFTNSIE 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,700
Number of Sequences: 5004
Number of extensions: 63960
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -