Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP05_F_E02
(943 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC006504-1|AAH06504.1| 239|Homo sapiens mRNA turnover 4 homolog... 216 8e-56
BC003013-1|AAH03013.1| 239|Homo sapiens mRNA turnover 4 homolog... 216 8e-56
AY303790-1|AAP68821.1| 239|Homo sapiens acidic ribosomal protei... 216 8e-56
AL035413-12|CAI22233.1| 239|Homo sapiens mRNA turnover 4 homolo... 216 8e-56
AK027569-1|BAB55205.1| 239|Homo sapiens protein ( Homo sapiens ... 216 8e-56
AF173378-1|AAD52608.1| 239|Homo sapiens 60S acidic ribosomal pr... 215 2e-55
BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein. 39 0.023
BC130535-1|AAI30536.1| 867|Homo sapiens C18orf34 protein protein. 35 0.37
BC091517-1|AAH91517.1| 849|Homo sapiens C18orf34 protein protein. 35 0.37
AK126038-1|BAC86407.1| 829|Homo sapiens protein ( Homo sapiens ... 35 0.37
AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein. 31 4.6
AK128570-1|BAC87504.1| 851|Homo sapiens protein ( Homo sapiens ... 31 4.6
AF501281-1|AAO59914.1| 2127|Homo sapiens ATP binding cassette tr... 31 4.6
>BC006504-1|AAH06504.1| 239|Homo sapiens mRNA turnover 4 homolog
(S. cerevisiae) protein.
Length = 239
Score = 216 bits (528), Expect = 8e-56
Identities = 104/186 (55%), Positives = 135/186 (72%), Gaps = 1/186 (0%)
Frame = +1
Query: 199 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 378
MPKSKRDKKVSLTKT KKGL KQ +IEE+R + Y+++F+F++ NMRN+KLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 379 KDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQ 558
K SR FFGKNKVM +ALG++ SDE ++ L+ +SK+L+G+ GLL TNR +V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 559 ASEYARAGFIATKDVLLPKGPLXDFSHTIEPHLRRLGLPTSLEKGVINLIKDIRFA-ERC 735
+YARAG A V L GPL F H++EP LR+LGLPT+L++GV+ L+ D E
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180
Query: 736 SLTPEQ 753
LTPEQ
Sbjct: 181 VLTPEQ 186
>BC003013-1|AAH03013.1| 239|Homo sapiens mRNA turnover 4 homolog
(S. cerevisiae) protein.
Length = 239
Score = 216 bits (528), Expect = 8e-56
Identities = 104/186 (55%), Positives = 135/186 (72%), Gaps = 1/186 (0%)
Frame = +1
Query: 199 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 378
MPKSKRDKKVSLTKT KKGL KQ +IEE+R + Y+++F+F++ NMRN+KLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 379 KDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQ 558
K SR FFGKNKVM +ALG++ SDE ++ L+ +SK+L+G+ GLL TNR +V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 559 ASEYARAGFIATKDVLLPKGPLXDFSHTIEPHLRRLGLPTSLEKGVINLIKDIRFA-ERC 735
+YARAG A V L GPL F H++EP LR+LGLPT+L++GV+ L+ D E
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180
Query: 736 SLTPEQ 753
LTPEQ
Sbjct: 181 VLTPEQ 186
>AY303790-1|AAP68821.1| 239|Homo sapiens acidic ribosomal protein
PO-like protein.
Length = 239
Score = 216 bits (528), Expect = 8e-56
Identities = 104/186 (55%), Positives = 135/186 (72%), Gaps = 1/186 (0%)
Frame = +1
Query: 199 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 378
MPKSKRDKKVSLTKT KKGL KQ +IEE+R + Y+++F+F++ NMRN+KLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 379 KDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQ 558
K SR FFGKNKVM +ALG++ SDE ++ L+ +SK+L+G+ GLL TNR +V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 559 ASEYARAGFIATKDVLLPKGPLXDFSHTIEPHLRRLGLPTSLEKGVINLIKDIRFA-ERC 735
+YARAG A V L GPL F H++EP LR+LGLPT+L++GV+ L+ D E
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180
Query: 736 SLTPEQ 753
LTPEQ
Sbjct: 181 VLTPEQ 186
>AL035413-12|CAI22233.1| 239|Homo sapiens mRNA turnover 4 homolog
(S. cerevisiae) protein.
Length = 239
Score = 216 bits (528), Expect = 8e-56
Identities = 104/186 (55%), Positives = 135/186 (72%), Gaps = 1/186 (0%)
Frame = +1
Query: 199 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 378
MPKSKRDKKVSLTKT KKGL KQ +IEE+R + Y+++F+F++ NMRN+KLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 379 KDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQ 558
K SR FFGKNKVM +ALG++ SDE ++ L+ +SK+L+G+ GLL TNR +V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 559 ASEYARAGFIATKDVLLPKGPLXDFSHTIEPHLRRLGLPTSLEKGVINLIKDIRFA-ERC 735
+YARAG A V L GPL F H++EP LR+LGLPT+L++GV+ L+ D E
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180
Query: 736 SLTPEQ 753
LTPEQ
Sbjct: 181 VLTPEQ 186
>AK027569-1|BAB55205.1| 239|Homo sapiens protein ( Homo sapiens
cDNA FLJ14663 fis, clone NT2RP2002862, weakly similar to
60S ACIDIC RIBOSOMAL PROTEIN P0. ).
Length = 239
Score = 216 bits (528), Expect = 8e-56
Identities = 104/186 (55%), Positives = 135/186 (72%), Gaps = 1/186 (0%)
Frame = +1
Query: 199 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 378
MPKSKRDKKVSLTKT KKGL KQ +IEE+R + Y+++F+F++ NMRN+KLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 379 KDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQ 558
K SR FFGKNKVM +ALG++ SDE ++ L+ +SK+L+G+ GLL TNR +V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 559 ASEYARAGFIATKDVLLPKGPLXDFSHTIEPHLRRLGLPTSLEKGVINLIKDIRFA-ERC 735
+YARAG A V L GPL F H++EP LR+LGLPT+L++GV+ L+ D E
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180
Query: 736 SLTPEQ 753
LTPEQ
Sbjct: 181 VLTPEQ 186
>AF173378-1|AAD52608.1| 239|Homo sapiens 60S acidic ribosomal
protein PO protein.
Length = 239
Score = 215 bits (525), Expect = 2e-55
Identities = 104/186 (55%), Positives = 134/186 (72%), Gaps = 1/186 (0%)
Frame = +1
Query: 199 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 378
MPKSKRDKKVSLTKT KKGL KQ +IEE+R + Y+++F+F++ NMRN+KLKD+RN W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 379 KDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQ 558
K SR FFGKNKVM +ALG++ SDE ++ L+ +SK L+G+ GLL TNR +V WF Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKTLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 559 ASEYARAGFIATKDVLLPKGPLXDFSHTIEPHLRRLGLPTSLEKGVINLIKDIRFA-ERC 735
+YARAG A V L GPL F H++EP LR+LGLPT+L++GV+ L+ D E
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180
Query: 736 SLTPEQ 753
LTPEQ
Sbjct: 181 VLTPEQ 186
>BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein.
Length = 254
Score = 39.1 bits (87), Expect = 0.023
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 2/159 (1%)
Frame = +1
Query: 265 KQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDWKDSRF-FFGKNKVMAIAL-GKT 438
K +I L Y F+ +N+ + +++ +R + GKN +M A+ G
Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69
Query: 439 KSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQASEYARAGFIATKDVLLPKG 618
+++ E+L L+G G + T D+ ++ + + + ARAG IA +V +P
Sbjct: 70 ENNPALEKL----LPLRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVP-A 124
Query: 619 PLXDFSHTIEPHLRRLGLPTSLEKGVINLIKDIRFAERC 735
+ LG+ T + +G I ++ A C
Sbjct: 125 QNTGLGPEKTSFFQALGITTKISRGTIEILGVRNVASVC 163
>BC130535-1|AAI30536.1| 867|Homo sapiens C18orf34 protein protein.
Length = 867
Score = 35.1 bits (77), Expect = 0.37
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +1
Query: 232 LTKTNKKGLVHKQKVIEEIRNSL---SKYE-HIFLFTINNMRNTKLKDLRNDWKDSRFFF 399
LT+ NKK + K+ E+ S+ SKYE I TI ++N K L+N +K++ +
Sbjct: 449 LTEDNKKLEIDINKITEKTNESIRKKSKYESEIKYLTIMKLKNDK--HLKNIYKEA-YRI 505
Query: 400 GKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQ 495
G L K K+DE+E+++ + +K KG+
Sbjct: 506 GT----LFHLTKHKTDEMEDKIAEVRRKFKGR 533
>BC091517-1|AAH91517.1| 849|Homo sapiens C18orf34 protein protein.
Length = 849
Score = 35.1 bits (77), Expect = 0.37
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +1
Query: 232 LTKTNKKGLVHKQKVIEEIRNSL---SKYE-HIFLFTINNMRNTKLKDLRNDWKDSRFFF 399
LT+ NKK + K+ E+ S+ SKYE I TI ++N K L+N +K++ +
Sbjct: 449 LTEDNKKLEIDINKITEKTNESIRKKSKYESEIKYLTIMKLKNDK--HLKNIYKEA-YRI 505
Query: 400 GKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQ 495
G L K K+DE+E+++ + +K KG+
Sbjct: 506 GT----LFHLTKHKTDEMEDKIAEVRRKFKGR 533
>AK126038-1|BAC86407.1| 829|Homo sapiens protein ( Homo sapiens
cDNA FLJ44050 fis, clone TESTI4032895. ).
Length = 829
Score = 35.1 bits (77), Expect = 0.37
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +1
Query: 232 LTKTNKKGLVHKQKVIEEIRNSL---SKYE-HIFLFTINNMRNTKLKDLRNDWKDSRFFF 399
LT+ NKK + K+ E+ S+ SKYE I TI ++N K L+N +K++ +
Sbjct: 449 LTEDNKKLEIDINKITEKTNESIRKKSKYESEIKYLTIMKLKNDK--HLKNIYKEA-YRI 505
Query: 400 GKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQ 495
G L K K+DE+E+++ + +K KG+
Sbjct: 506 GT----LFHLTKHKTDEMEDKIAEVRRKFKGR 533
>AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein.
Length = 5058
Score = 31.5 bits (68), Expect = 4.6
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Frame = -3
Query: 353 FVFLMLLMVNKNMCSYLLSEFLISSMTFCLCTK--------PFL--------LVFVSDTF 222
F+FL+ ++ M SYLLS F + T LCT P++ L FV+ TF
Sbjct: 3651 FLFLLDFGMSVVMLSYLLSAFFSQANTAALCTSLVYMISFLPYIVLLVLHNQLSFVNQTF 3710
Query: 221 LSL-----FDFGIFVLLF**GKRQNLQFN 150
L L F G+F + F G+ +Q+N
Sbjct: 3711 LCLLSTTAFGQGVFFITFLEGQETGIQWN 3739
>AK128570-1|BAC87504.1| 851|Homo sapiens protein ( Homo sapiens
cDNA FLJ46729 fis, clone TRACH3019370, weakly similar
to ATP-binding cassette, sub-family A, member 1. ).
Length = 851
Score = 31.5 bits (68), Expect = 4.6
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Frame = -3
Query: 353 FVFLMLLMVNKNMCSYLLSEFLISSMTFCLCTK--------PFL--------LVFVSDTF 222
F+FL+ ++ M SYLLS F + T LCT P++ L FV+ TF
Sbjct: 406 FLFLLDFGMSVVMLSYLLSAFFSQANTAALCTSLVYMISFLPYIVLLVLHNQLSFVNQTF 465
Query: 221 LSL-----FDFGIFVLLF**GKRQNLQFN 150
L L F G+F + F G+ +Q+N
Sbjct: 466 LCLLSTTAFGQGVFFITFLEGQETGIQWN 494
>AF501281-1|AAO59914.1| 2127|Homo sapiens ATP binding cassette
transporter A13 protein.
Length = 2127
Score = 31.5 bits (68), Expect = 4.6
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Frame = -3
Query: 353 FVFLMLLMVNKNMCSYLLSEFLISSMTFCLCTK--------PFL--------LVFVSDTF 222
F+FL+ ++ M SYLLS F + T LCT P++ L FV+ TF
Sbjct: 719 FLFLLDFGMSVVMLSYLLSAFFSQANTAALCTSLVYMISFLPYIVLLVLHNQLSFVNQTF 778
Query: 221 LSL-----FDFGIFVLLF**GKRQNLQFN 150
L L F G+F + F G+ +Q+N
Sbjct: 779 LCLLSTTAFGQGVFFITFLEGQETGIQWN 807
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,503,332
Number of Sequences: 237096
Number of extensions: 2083894
Number of successful extensions: 3530
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3530
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12381054106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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