Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP05_F_D23
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.6  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 564 GGXXPPPPPXPXGXGFFXGGXXXGP 490
           GG  PPPPP P    F+       P
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAP 327


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 564 GGXXPPPPPXPXGXGFFXGGXXXGPKKXXPXPXGGG 457
           GG    PPP P G G F G    G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = +1

Query: 418 GGGGGGFXXXKKXPPPXGXGGXFFXAXXPXPXKKTXXPGXGGG-GXXXXPPXG 573
           GGG GGF      PPP   G   F              G GGG G     P G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 492 PKKXXPXPXGGGXFFXXXKXPPPPPXXXKKKKK 394
           P    P P     F    + PPPPP    KK+K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,657
Number of Sequences: 5004
Number of extensions: 17477
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)